MmuINT0057665 @ mm10
Intron Retention
Gene
ENSMUSG00000048120 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:MGI Symbol;Acc:MGI:102805]
Coordinates
chr19:40724925-40726258:+
Coord C1 exon
chr19:40724925-40725084
Coord A exon
chr19:40725085-40726021
Coord C2 exon
chr19:40726022-40726258
Length
937 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AGCACTGTCTTTTCTTTCAGGAA
3' ss Score
11.43
Exon sequences
Seq C1 exon
AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG
Seq A exon
GTAAAGACCTCACACTTCGGAGGTGGTTCCAAGAGGGTCACTGCCATTATTATCTTGGGCAATATTTGGGTCTTTAGCAAAGTGAATGATGGATAGATAAATGAATGGATGGATGAAGATACGTCTACATTTGTAGCCATCGCTAGAGGAATATTTACCTTAGTCTTATTACTGGAGAATATCAAAGCCATGTCTTCATCTCAGGGAGACAGGGGAAAAGAAAATCTACTTTAAAGAATTTATTTTAACAAATTATGTGTATGTGTGTGCATCTGTGTGAGTGTGCCTGTGTACAAGAGTGTCTCCAGAGGTCAGAAGAGGCCGTCAGACCTCCTGGAACTGGAGTTATATGCAGCTGTGAGCCTCCCAATGTTAGGAATCAAATTCCAGTCCCCTGCACGGGCAGTATATACTCTTAACCACCGAGTTCTCTCCAGCTCCCAGATACATTTCACTTAGTCTCATTTTAATCTGATTAAAATTAAGACTAACTGGGCAGAGACATTAGTGAGGCTGAGGCAGGAGAGTTGCAAGTTGGAGTCCAGCCTGAACAACATAGTATGACTAGGTTTAAAGCAAAGCAAAATGAAATTGTATTTGCTAAGTGAGGAGTGCTTAGCAGTCTCCCCGTGGTGTGACTCTTTCCTCAGAACAGCCTCGGGTGGCACATTATTGCCCATGATGATGCTTAAAAATAGAATCTTTTCTGGCCCAGGTCTCTTAGCTGGTGGCTGAGTGGGGATTTGTTCTTGTTTGAGAACCATAATGTTCTTGGCCTCTGCTCTGCTATTCTCAGAGCTGTGTCTTCAAAGCCCTCTTGCTGGTTGTTGATACTGATTTGGGAACCCACAGTAGACTTTGAGCAACTCTCTGTCCCTGGATCTCCATCTTGGCAAGTAGGATGTCCAGAGACTTCTAGCACTGTCTTTTCTTTCAG
Seq C2 exon
GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048120:ENSMUST00000112231:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PD(52.4=94.3)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGTGTCAACAAGCCTT
R:
CAGTTTCTGCCAGAGAGCCTG
Band lengths:
348-1285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types