GgaINT0043434 @ galGal4
Intron Retention
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21574475-21575445:+
Coord C1 exon
chr6:21574475-21574634
Coord A exon
chr6:21574635-21575208
Coord C2 exon
chr6:21575209-21575445
Length
574 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
ACTTCAAATTTTTTTTCAAGTCT
3' ss Score
5.02
Exon sequences
Seq C1 exon
GTTGGAAAATAAAGATGCAGCTGAAAAAGTCTTGTCCTCAGTAGAGAAGACACTACGCTCAGCTCCCTTCAATTTCCAGGGCGCCAGAATCATCAGTGGTCAGGAAGAAGGAGCCTATGGATGGATCACCATTAACTACTTACTTGGTAATTTCAAGCAG
Seq A exon
GTATTGTATCACTGGCAAGTCTAGATTTGAACCACTGGCCGGCAGTGCTGTGTAAATCATGCCTTTCATGGGGGTGTTTCAGGAGGCTCCCTGTGAGACATTTATCAGAGACCAGGATGCTGTGCTCCTTAGACAGTCTTAGAGCACTGAAATAAAACAACAGTTTCAAGAACTTTTCCTGGATACAGCATCTTTCTCACTTGCTGATCTAAAATACTTCTGTGCTTGGTTAAATATCTGCAAAGTATCAATAAAACTTTTCAGTATTTGATGATGATTCTTTACTATCTGGTTTATAAATCATCTGGGCACTGAAACAGTAAACTGACTTTTCACATAGCAGTTGTGTTTGATTACGTGTTCCTCAACCTCCTGCAAATACTTGGACGTGATCCATCTTCTGCTCTTCTGAGCCTGCACCTTGTTCTGGTTCTCATCTCTTGCCCTCCTCCAAGCCCTACTCCCTTTCCTGCATTCTGTCCTTCTGCTACTATTCTACGAAGACGTTCTCTTTTTGTTCCCAAATACATCTTCTCCATGCCTGATGAATCTGTACTTCAAATTTTTTTTCAAG
Seq C2 exon
TCTGGCTGGAAAAAATTTCTACATTCCCTGAAATCCGTAAGTGAAACATCAGGAGCGTTAGACCTTGGAGGAGCCTCAACACAGATTACCTTTGTACCAGATGAAATCTCTTCTGAGTCGCCACAGAATTTGCTGTATTTCCGCCTCTATGGCAAGGATTACCGAGTGTACACACACAGCTTCCTTTGCTATGGGAAGGACCAGGCTCTGCAACAGAAACTGGCCAGGGACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078:ENSGALT00000011467:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.2=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACACTACGCTCAGCTCC
R:
CTGGCCAGTTTCTGTTGCAGA
Band lengths:
342-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]