RnoINT0055226 @ rn6
Intron Retention
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2291722-2292221:+
Coord C1 exon
chr3:2291722-2291881
Coord A exon
chr3:2291882-2291993
Coord C2 exon
chr3:2291994-2292221
Length
112 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
AGCACTTCCTCTGTGGTCAGTAT
3' ss Score
4.17
Exon sequences
Seq C1 exon
CCAGAAGAACAGCTCTCAGGCTCAAGACATCCTAGCTGCAGTCTCCCAGACACTGAGCAGGGCTCCGGTGGACTTTTGGGGAGCCAGGATCCTGGCTGGGCAGGATGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGTCCTGGGAATGCTCCTGAAG
Seq A exon
GTGCAGGGGTAGCCTAAGGGTGAGGGGTCGGTCCAACAGGCCTGGGGGCGGCTGGCCAGCAGCTGGGGCCAGTGCGGCTGCTGGGCGAGCTAAGCACTTCCTCTGTGGTCAG
Seq C2 exon
TATTCGTCTGGACAATGGATCCTGCCTGAAGATGGGACGCTAGTTGGTGCTCTGGACCTTGGCGGGGCCTCCACGCAGATCAGCTTTGTGCCTCAGGGCCCCATCCTGGACCAGAGCACCCAGGTTACCTTCCGCCTGTACGGCGCCAATTACAGTGTCTACACTCACAGCTACCTCTGCTTTGGGCGGGACCAGATCCTAAGAAGGCTCCTGGCTGAACTGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239:ENSRNOT00000012289:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTCTCAGGCTCAAGACA
R:
CACAAAGCTGATCTGCGTGGA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]