BtaINT0058344 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56256889-56259423:+
Coord C1 exon
chr19:56256889-56256986
Coord A exon
chr19:56256987-56259323
Coord C2 exon
chr19:56259324-56259423
Length
2337 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGTCTCCACCCCTCATCAGAGC
3' ss Score
6.9
Exon sequences
Seq C1 exon
ATGTTCAAGGGGTTGAGCAAAAGCTCTCAGGGGAAGGGGTCCCCCAAGGGCTCCCCGGCCAAAGGCTCCCCCAAGGGGTCCCCCAACAAGCACAGCAG
Seq A exon
GTGAGCGCGGCCGGGGGTGGGGGCCGGAGCCAGGATGGCTCCAGACCCAGGGGCTCCAGCCACCTGGAGGCAGCCGGCCAGAGCCGGGGACCAGCCCAGCGCTGGCATTTGGTGTCCTGAGGCTAAAGAGCCTGGGGGTGGACTCTCTTCCTGGCCCAGGCCCAGGTCCAGCCCTGGCAGGGGCCCAGGCATGGCCTGGAGCTCCCCATGTTCTGGGGGGTGCAGCCTGAGGGCTCTACAGACATGCTAGGCAGGGGCCTGAGCTTTCCTCCTCTGCTGGGAGGTGAGGAGGCTGGAGGGCACGGCTCTCCACCCACGGCTCTGCCCTCTAGGCTCCACTTATCCTGAGATGACCCATGGGACCTGGGCACAGGGTGGGCAGAAGGATTGAGGCCAGAGAAGCCAAGAGGTGGGCTGCGGAGTGCCCAGAGGCAGGGAGGCGGGGCTGTGCTGCTCCAGGTCCAGGCTGCGGCTTTCCCCACCGGCTGGCACCTTGGGCCTCGAGAGCTTTGTTATGGAGATGAGATGATTCCTTCACCGGGTGGGTGTGTGGAGGGGTGCTATGGGGAAGCAGTAGGGGCCCACGGATGTCTCAGAGCCTTCCTCAGTTCACCCAGCTCTCTGCAGGGTCCCCAGCCCGCCGCCCCCTCCCAGAGCCCCACTCTCTGCAGACAGGCTCGGGCAGCCTTCTTCCACTCACTGGCTGTCAGCCCCCTCTGCTAGGTGGAGGCAGCAGTTCGCCCGGGGTCCTGGGTGTGAAGGTGGGGGCCGAGATGAAAGGCCCAGCACCCGATAGGGATCAGGGCGAGGACACAGGCTGGGCTTCTGGGCGGACAGGAAAGATGGTGGCTAAGACTCTCACTGGAGTGACCTGTCCCCCCTGGGGCTTGGGCCCTGCCCAGGGCGGAGTGGGCTCCTCCCGGCGGGAGCAGCCCTCCCAGGATTCCGGACCTGGAGCTCCCAGCCCCAGGGCGGCTCCCGGTCATCTCCTTCCCCTCAGCCCTGTCCTCGGGCGGCGGCCCCAGGAGGGCACATCAGTCCCCTCCCGTGCAGTCCATTTGTTCAGCACATATTTATGGAGCACCTACTGTGTGCCTATTTATGGAGCACCTACTGTGTGCTGGGGCTGCTCTAGGCCCTGCGGATGCCATCGTAAACAGAATGGACAGGTCCCAGCCTTCAGATCCCTTTAGAGGAGTAAAAACAAGCACTTAACGGGAGCTGACAGGACGCTAGTTTTCTTCACAGTCACACGGTGAGGAGGTGGATATACTAGAGCGTTGGCCTCTAGGTGAGGAGCCTTAGGCCCAGAGAGGTTAAGTAACTTGCCCAAGACCACACAGCTGCAGGGATAGAGGAAGATAAAAGCCAGGCTGCCGGTCAGAGTTCTTTCAGACTGTCTCTTTGTGGCACAGCCCTTCTGCTTGGAGGGGGCTTCTCCTTGGACCCCTGGTTCAAGGCCCAGCCCGTGTTGCCATCCCTCCGCAGGGACGGTGACCTCACAGGGTGCTGTGCTCCTGAGGCTTAGACCACATTCTTATTAGGTCTGCTTGCCCCTCTAGGCCCCAGAGAGTGAGCTGGAGCCCACAGCTGGCACCCTGTAGAGGCTGGGAGACGGCCCTGGGAAAGGACCCCGGTTCAGGCTCATCCTCTGCTCCTCCTGGCTGTGCCACCTGGAGCGAGTCAGGTCCAAGCTTGGGCTCTGAACCCCCGAATCTGGAAAGTGTTGGGGTTCCCTGGCAATCTCATGGCCCACCTCCCCCACCGGGTGCTGTGTGTCTCCTCTGCAAGCTTGCTAATCCCGGGCAGGCCCTGCAAAGCCTGGGGCAGTGGAGGGGGACGGGGCTGGCGTGGGAGGAAGCTGAGCCGGGGGACTTGGTGCTGTTCCCCTGCCCCCAGCCAGCTCACCCAGCCCTCCCAGGATCCAGCTGTCCGCCTCAGGTATTAGGGGCTGAGCCAGTGAGTCATGTGCTCCCCTGCGGGCTGCCTCCCCTCCAGCCTGAAGCAGCAGCAGAGAGCAGGGTGGGGTTGGGAGGCACTTCCTTGATGGGGGGAGATGGCAGCTCCACAGTGCCACCCACACTCAGGACCCTCATTTTCTGAACCCTCACTGAAGGCAGAGCTCCCCTGCCCAGGACTGTGTAGCTCACAGAGATTCCTACCGAGAGGCCAGGGCTCCCCAGGTCTTGACTCCACCCTCCTAGGCCACTGAGCTCAGCTGTAGGGCAGGACAGGGCGGGTGCAGGCAGGGGATCCCACCTAGGTGGGCAGACCTCTGCCCAAGGGAAACAGGGAACTTTGCCAACCAGGCTGCCCTCTGTCTCCACCCCTCATCAG
Seq C2 exon
AGCTGCCACTCAGGAGCTGGCCCTGCTGATCTCCCGCATGCAGGCCAACGCCGACCAGGTGGAGAGGGACATTCTGGAGACCCAGAAGAAGCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]