HsaINT0058495 @ hg19
Intron Retention
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:3503]
Coordinates
chr17:74020102-74023507:-
Coord C1 exon
chr17:74023182-74023507
Coord A exon
chr17:74020202-74023181
Coord C2 exon
chr17:74020102-74020201
Length
2980 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
CTGTCCCCTCCACACACTAGGGC
3' ss Score
6.27
Exon sequences
Seq C1 exon
AGTGTGGCCGTTGTGGGTGCATGCGCGTCAGGCCTGGGACCCGGCCGCCCGCCCGCTGCCTCACCTGCAAGGAGGGGCCTCCCAGAAACTCCCTTCCCCAGTGCCCAGCCGCCCCACCTCGCCAGACTTAGCTGACCAGCCAGTGAGGACGCCCGCTGCCTCCCACCTGCCCTCCTGCCGTCTTTCGCCAGCCAAGCCCAGCCTGAGCCAGCACTTGCCTTTACGACCATGTTCAAGGGGCTGAGCAAAGGCTCCCAGGGGAAGGGGTCCCCCAAGGGCTCCCCCGCCAAGGGGTCCCCCAAAGGCTCCCCCAGCAGGCACAGCCG
Seq A exon
GTAAGTGGGACTGGGGGATGGGGAGCCGGGGAACTGGGGTGGGGGTGGTGCCAGGCCCAGGTCCTTGAGCCACCTGGCGGCGGCGGCGGCCCAGAGCCCAGGACCAGCCCCGTGCTGGCATTTGGTGTCCTGAGGCCAAAGGGCCCAGGGATGGACTCTCTCCCTGCCTTGGGAGCCGCAGGCCCAGGCCGAACTTCAGCCCTGGCAGGAGGCAGGGGATGACCTGGGGCTCCCTACATCCTCTAAGGGGGCCTGAGGGCCACGGATTGAGGCCGCTTCGCGGGAGAAGTGCTGGACAGGAGCCTGCACGGAGGCCCTCCTCTGCCAGAGGCTGGGAGACAGGAGAGCCTGGGAGACAGGAGAGCCTGGGAGACAGGAGAGCCTGGCTGCCTGACTGCAGCTCTGCCCCAAGGCTCTACTTGGCTGGGATGACCCCTGGAGCCTGGGTACAGGGCATGAGGACTGAGGGGACGGGGTGGGATCCCTGGGGTAGGGATGCAGGGGCTGTGCTGCCTCCTGCCTAAGCCACAGCCCTCCCCAGAGTTCTCACCCAGGGCCTTGTTGTATTGAAGAGTTAGGGGTTCATGGCCGGGCGCCGTGGCTCACGCCTATAATCCCCGAACTTCAGGAGGCCAATGCGGGAGGATTCCTTGAGCCCAGGAGCTCGAGACCAGCCTGGACAACATAGGGAGATCTTGTTTCTGTAAAAAAATAAAAATAAAAAATAGCCAGGCATGGTGGCTCGTGCCTATTGCTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCCATGATCACACCCCTGCGCTCCCGCCTGGGTGACAGACTGAGACTCTGTCTTAAAAAAAAAAAAAAAAAAAATCCTGGCGCAATACCTCACGCCTGCAATCCTACAACTTTGGGAGGCCGAGGCGGGTAGATCACTTGAGCCCGGGAGTTCGAGACCAGCCTGGGCAACATGATGAAATCCCGTCTCTACAAAAAATATACAAAAATTATCTGGATGTAGTGGCGCATGCCTGTAGTCAGAGCTACTTGGGAGGCTGAGGTGAGAGGATCACTTGAGCCCGGGAAGTCGAGGCTGCAGTGAGCCGTGATCACTCCACTGCCCTCTAGCCTGGGTGACAGAGCAAGACCCTGTCTGTTAAAACAAAATAGAGCTGGGGCTTCCTTTTCCAGTGGGTGTGGTGCAGGGGGCACTGGGCCTCCCTTGGACCACCCGGCTCTCTGGAGCCCAGCCTCAGCAATCTGTGGATGGATTGGGCGGTGTTCTTCCCACTCACTGGCTTCAGCTCGTCTGCAGAGGAGGCAGCAGCCCGCCTGGGTCCAGGGTGTCGAGATGACCTCAGGGATGAAAGGCTGGTGTGGGAGTGGGGGTGCCCATTACCCCGATAGGGATCAAGGCACCAACAGACACCGAGGCTGGGTGTCTGGGCGGACGGGAAAGACAGTGGTTAAGACTCTCAGCTAACACTCTCGCTGAGTGACCTGTCCTCCCTGGGGCACCTGAGCCCCACCCAGGGTGGAGTGTGCAGCTCCCGGTGGGAGCAGCCATCCCAGGAGGCGGGACCTGAGGAGGGGCGCCCAGGGCCCAGCACCTGCAGCTCCCACTGTCCAGGCAGGCTCCCCAGCAGTGCGCTCCTGGCCTGGGGCAGCTCCGTCCTCAGGGCCCTGTTGGCTCTCCCCTCACGTGCGATCCACTCGTTTGACATGAACTTACTGAGCACTTACTGTATGCCAGGACTGTTCTAGGCACTGGAGATGTCACTGTAGACAGAACCAACAAGCCCCTGCCTTCAAGGCACTAGCCCTCTAATGGGATAAAAACTAACACGTGCTGGGTGCCGACCCTGCACCAGGCCTGCACTGGACGTTTCAGATGGATAAATTCAATTAATGCTCACAATAGCCCTAAGGCATAGATATTTTTATTAAAATCCCGCTTTACAAGTGAGGAACCTCAGGCACAGAGAGGTTGAGTAACTTGACCAAGGTCAAGTCCATCATCTTTCTGATGGAGAAAGATGAAACCAGGGTGTCTTGGCCACAGAGTTCTTCCAGACTGCTGTGCCTTCACCAGCACTGTCCCTTTGCCTGGGGGGGCCCATCCTTTGACCCAGTTCAAGGCTTCTCCTGCCCCAGCATAATGATCCCCCATAAGGCACTGTGCTCATAAGGCTTGGACCAATCTGCCCTCTTTTAGGTCTGCTTGACCTTGTGACCTCCGCACAGTGAGTGCATGCACACAGCAGGTGCTCTATGGAGGCTGCAGGGCGAATGCACAGAAAAAGCCCTGGGGTGGAAGCAAGGTTTCCCCTCCACCCCTGACCATGTGACTCAGAGCAAGTCAGAGCCCAATCTGGGCTTTGAACCCTCAACTCTGGAGAATGTTAGGGTGCCCAGTAGTCTCTTGCGCCTGCCCCACCTCCCCGGCTCCGACAGTGTGAGGCTCCTCTAGATGGCTACTGAAGCCAGCATGCTGGCAAGGCTCCCTGGGGTGGAGGAGGTATAGGGGAACACAGGGCTGGAGTGCGAGGAGGTGGGGATGGGGGACATGCTGCTGCCTCCCTGCCCCAGCCAGCCCAACTACCCCTCCCAGGGCCCAGCCAGGCTGGCTCAGGTGCTAGTGGCTGAGCCGGTGATTCACTGGCTCGGGGAGGGAAGTGGCAGGTAGCTAGGTGGGGTCGGGAACTCACTGCCAGCACAGCTGGCTAAGGCTGGGACACCGAGGCCGCCTGCCCCCTCCCCAGCACCACACAAACCTGAGACCCTCACCTTTTGACCCCTCATGTGGCGGGGCAGTGCTAACACCCCCAACCAGGACTAGCTCACAGAGCCTTCTGCAGAGAGAGACCCCAAAGTCAGGGCAGTGAGCTAGGCTGTGGGGGCAGGATGGGGTGGAGGGAGGGCAGGGGATGCCACCTGGATGGGGCACAGAGGGGCCTCTTCCACCGAGCTACCCGCTGTCCCCTCCACACACTAG
Seq C2 exon
GGCTGCCACCCAGGAGCTGGCCCTTCTCATCTCCCGCATGCAAGCCAACGCCGACCAGGTGGAGCGGGACATCCTGGAGACGCAGAAGAGGCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-EVPL:NM_001988:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)