BtaINT0058856 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15366947-15368013:+
Coord C1 exon
chr27:15366947-15367122
Coord A exon
chr27:15367123-15367917
Coord C2 exon
chr27:15367918-15368013
Length
795 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTGTGATTTTTAAAATTTAGACT
3' ss Score
5.95
Exon sequences
Seq C1 exon
GGTCAAGTCACCTAATGTGTTGCGTGTCTATAGCGGCATTTTGAATCAATCAGAAATAAAAGAGGATACATCTTTCTTTGGGGTTCAAGAAATAATAATTCATGATCAATATGAAAAGGCAGAAAGTGGATATGACATTGCCTTGTTGAAACTAGAAACGGCAATGAATTATACAG
Seq A exon
GTATGGGAAACTTTAAACAGAACGTTGTCTACAGTGATGCCGGGCTTCACACTCCCAGGTTCCTGGCCTGACCTGGCAGTCCCTCCATGTATTACTGTCATTAAAAAGGGAGAAGGGCTGCAAAGCTCCCCTTTCAGTCCATTAAGACTGAGTGCTGGGATCTTCCCTGGTGGCCCAGCGGTTGAGATTTTGCCTTTCAATACAGGGGGTGCAGGTTTGATCCTTGGTCTGGGAGTTAAGATCCCACATGCCACATCCCACAGGCAAAATAAATTAGAGCATAGACAACAGAAGCAATATTGTAACAAACTCAATAAAGGCTTTAAAATGGTTCATATTAAAATATATATATATTCATATAAAAGACTGACATGCTGTCCTGATGATTAAATCTATTTTTTTGTGGGGAGGGGTTAAAATGGCAAGTTTTCTTCAGATTCACAGAATGACATGACTTCATAATATATTGGAATGTTAAAGATGGCTTATATCTCCTTTTTAAGGAAGAAAGGATGGCAAGTCAGAATGAGGAAGCAGTTTCTATAGCATCACAGACCTCATGAGAGTGACAGTTAGTGGAGGAGGCTGTCTCTTGTTCCCTCCTCCTTGATGTGTGATAGATAACTCTGAACATGAGGAATGAAAATGTATGACAAAGAGGGGAAAAAAAAAAAAAACCCCGAATATAATAAACTGAGAACACACCCTAATCATAGAAAGTGAAGGAAGAGAGTTTTCCTGGGAAATGTGATGTATTCTGTTTCTGATAACTAAACTGTGATTTTTAAAATTTAG
Seq C2 exon
ACTCTCAATGGCCCATATGCCTACCTTCCAAAGGAGATAGAAATGTGATGTATACTGAATGCTGGGTGACCGGATGGGGATACAGAAAATTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572:ENSBTAT00000004648:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGTCACCTAATGTGTTGCG
R:
TCTTAATTTTCTGTATCCCCATCCGG
Band lengths:
270-1065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]