RnoINT0057452 @ rn6
Intron Retention
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50198385-50200200:+
Coord C1 exon
chr16:50198385-50198555
Coord A exon
chr16:50198556-50200060
Coord C2 exon
chr16:50200061-50200200
Length
1505 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
ATTAATATGACCTTTTTCAGATG
3' ss Score
6.67
Exon sequences
Seq C1 exon
AGACACCTAAAACTCTGCGTGTCTACGGTGGTATTGTAAATCAATCAGAAATAAATGAAGATACCACTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCAATATACATCGGCAGAAAGTGGGTTTGACATTGCCCTCTTAAAACTGGAACCGGCCATGAATTACACAG
Seq A exon
GTACATAGAGTTTTAGGTGGAAAGGGAACTATAAAGGTGACCTAGATAAAACATTCATGTTAGGAGACTCACAGTCTCACCTATGGGACCCAATCAACAGCCAGACAAGGAAAGTCTAGAAAGATGGCCTCTGTTGAGACAGACAGTTTTGCCTTAGAATACTAGATCACACGTTAAGAGAGCAGATAGAGGCTTGCCTTCAGGCTTCTTCAGGTACATAGAATGACATCATTTTATAAAATACAGGAGTAATAATAATGATTGACATGCTGCTTTAGTAACAAAGGGCTGGACAGCATGGTTAAGCAAATGCTACAGAATATTAAACCTTGTTAAAACGAAAGTTTGTGTAAAGAGGCACGTCCTATCTTTCTCTTGTCCCTTCTGCTGGGGTTGTTTGATATACACCATTGAACATAAGACGTGAAATACATGAGAAAAAGGTAACATGAACATCATAAAGAAAGAAAGCATGATTAATGATCAGGTAAAATAGCAATCCTTCCTGGGGAAAATGATTGTCTTTCTTTCTGCATTGGTCACTGTGACAAAATGCCTGCTGGAACCACCTTGCAAGAAAGAAAGGTAATATGGGCTCTCGTGATGTCAGAGGCTTCAGCCTGCGGTTGGGGGACTCCACTGCTTTGGAGCCCTTGGCAAGAAATGTGCAGAGTAGCAAACTGTTCACCTCTCGGATGCTGGGAAGAAGAAAGGAAGGGGCTGGGCTCCTAACAGCCACTTCAAAGGCCCACCCTCAATGACTTAACTTCCTTCCTTAGGCCCCACTTCCTGTCATCTCTAAGCAGTGTCAAAAACTGCGATAGAGTCTTTGAACATGGGTTTTTGGGGAGACTCCTCAGATCCAAACCATAGCAGCTTCTAGTGACTAAACTGTGATTTTCAAAATTAGATTTTCAGCGGCCAATATGCCTGCCTTCCAAAGGAGACAGAAACGTAGTTCACACAGAATGCTGGGTGACTGGATGGGGATACACAAAATCAAGAGGTAACAACCATGCTTAAACATTGCAGAGCTTAAACATTGCCTCTGTTTTCTATCTAGTCATATGTCCAAAATGTGAGTAAAGTGACACTACTCAAAAACAAGAAGATTGTTAACAAAGATCAATACATCTGATCAGAAACATTAAATATGATTAAACCCCTCTAAAAACTGTTTTAACTGGAGACTTTTAGTATGGGACCTAACACTCTATGCAAAAGTTCTAGCCTGGTTTCTAATCATTTTTGTCTGAAAAGAAATTCTACTTTAATGTCACAATTAATTTTAAACTCAATAACATTAATAAAATTATATACACAATAGTAGAAATGATGTCTTTCTTTATACTCCATACTTAGAAAAAAATGCACCTATGAATTGAGCTTAGTAATTTTTCCTCCTAGATTTTAATGTAAAAGTTGGGCTTTTAAATATAATTGTACATATACAATTGAGTGGAATAATAATCATTCCACTAAAACATTAATATGACCTTTTTCAG
Seq C2 exon
ATGAAGTACAAAGTACTCTCCAGAAAGCCAAGGTACCATTGGTGTCGAATGAAGAATGTCAAACAAGATACAGAAAACATAAAATAACCAACAAGGTGATCTGTGCAGGATATAAGGAAGGAGGGAAGGATACGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684:ENSRNOT00000041946:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(3.1=5.2)
A:
NA
C2:
PF0008921=Trypsin=FE(47.9=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACCTAAAACTCTGCGTGT
R:
CTTACACGTATCCTTCCCTCCT
Band lengths:
311-1816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]