RnoEX0033741 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50198385-50200200:+
Coord C1 exon
chr16:50198385-50198555
Coord A exon
chr16:50199466-50199561
Coord C2 exon
chr16:50200061-50200200
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACTGTGATTTTCAAAATTAGATT
3' ss Score
6.84
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
AGACACCTAAAACTCTGCGTGTCTACGGTGGTATTGTAAATCAATCAGAAATAAATGAAGATACCACTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCAATATACATCGGCAGAAAGTGGGTTTGACATTGCCCTCTTAAAACTGGAACCGGCCATGAATTACACAG
Seq A exon
ATTTTCAGCGGCCAATATGCCTGCCTTCCAAAGGAGACAGAAACGTAGTTCACACAGAATGCTGGGTGACTGGATGGGGATACACAAAATCAAGAG
Seq C2 exon
ATGAAGTACAAAGTACTCTCCAGAAAGCCAAGGTACCATTGGTGTCGAATGAAGAATGTCAAACAAGATACAGAAAACATAAAATAACCAACAAGGTGATCTGTGCAGGATATAAGGAAGGAGGGAAGGATACGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(3.1=5.2)
A:
PF0008921=Trypsin=FE(14.0=100)
C2:
PF0008921=Trypsin=FE(47.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCAGAAAGTGGGTTTGAC
R:
TCCTGCACAGATCACCTTGTTG
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]