BtaINT0058857 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15367918-15368705:+
Coord C1 exon
chr27:15367918-15368013
Coord A exon
chr27:15368014-15368565
Coord C2 exon
chr27:15368566-15368705
Length
552 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AAACCAAAATTTTGTTTTAGACA
3' ss Score
5.47
Exon sequences
Seq C1 exon
ACTCTCAATGGCCCATATGCCTACCTTCCAAAGGAGATAGAAATGTGATGTATACTGAATGCTGGGTGACCGGATGGGGATACAGAAAATTAAGAG
Seq A exon
GTAAGAAACCACATTTCTCTGTCTGCTACAGTGGAAGATACAGAGCACAGTTTAATCACAACATTTTCTGCTACCTCAAGTCACACAGCTAAAATGAGAGTAAAATAATATCATTATTCAATTGCAGAAAGTATATTCATAAAGATGGAAAGGCAAAAATCACCCAAAGGAAGATGATACCTCACCTATTTGGGAATTTTAAATATGACAATCTCTTTAAAGACTCATTACTTTTAATGAAGTTTAATTCAAAACCTAGCACTTTTCAGTAAATGTCTTACCCTGTTATCCAATTATTTTCTCTGGGAAGTAATTCCAGTTAGAGCCATAATTAATTTTGAGCTAAATTAACATGAAAAAAATGGTACAATAATGAGAATAACATCTTCTCTACAAGCTGTAATTACAAAAAGTCTGTGAACTAAACCTGATTGTTTTTCCTTCTAGATTTTTAAAATAGGTGCAATTTTTATTTTAAATATATGTACTTATATTTAAATTTATATTATATGTATGCGGTTATTCCTTTTATAAACCAAAATTTTGTTTTAG
Seq C2 exon
ACAAAATACAGAATACTCTCCAGAAAGCCAAGGTACCCTTGATGACAAATGAAGAATGCCAGGCAGGTTACAGAGAGCACAGAATAACCAGCAAGATGGTCTGTGCAGGCTACAGAGAAGGAGGGAAGGACGCCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572:ENSBTAT00000004648:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCAATGGCCCATATGC
R:
CTTACAGGCGTCCTTCCCTCC
Band lengths:
236-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]