BtaINT0058863 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15358901-15359878:+
Coord C1 exon
chr27:15358901-15359010
Coord A exon
chr27:15359011-15359718
Coord C2 exon
chr27:15359719-15359878
Length
708 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACT
5' ss Score
4.34
3' ss Seq
TGATGTCTTCTGCTGTGCAGCTT
3' ss Score
6.39
Exon sequences
Seq C1 exon
TAACACTTGTCTGTTGAAGAACACCCAAACAGGGACACCAACCAGCATAACGAAGCTCCACGAAGTGGTATCTGGATTTTCTTTGAAGTCCTGTGGCCTTTCTAACCTGG
Seq A exon
GTAACTATTATTTTCTTAATGAGGTAGTTTAGCCATTCAGTGCTAATGATATGTACAATGGGCCTCACTTAGGATACCAATTTGTGCTCACTAATGAAATGGACCCATTGACCTTTTATTTTCCTCATGAGAAAAAATCCATAATGGTCTGTATGACTAAAGTTTATATTGGAATTTAAAGCTTACAGCAATCACTTCAGTTATCCTAATTTTAAAAGTGTAAAAGATCGTGGGATAAACAAATCTTCTAAAGTTACTAGTAAGACCTTGTTTCTTTAGAGCTGTTTTAGGTTTGCAGCAAAATTGAGAGCAAAGGATAAAGATTTCCCTTTACATCCTGCCCAGACATGTAGTCAGCCTCCCCTATTACCAGCATCCCTCACCAGATGGTGCATTTGTTACAACTGATGAGCCAACATCATAATCACATCATAATCACCCGAAGTTCACAGTTGACATTACAAGCCACTCTTGGAGTCATACTTTGTATGGGTCTGAACAAATACATAGAGGCATGTTTCCATCATCAGAGTACCATTCAGAATATTTTCACTGCCTTAAAATTTCTCTGTGCTCTGCCTGTTCATCCCTCCCTCATCGCCCAACCAATTTTTTACATGGAATTTACAAGTACCGTGAGTGGGGTTTTACTTTTACCGACGCTACCAATGAACTGACCCTCTGAATATGATGTCTTCTGCTGTGCAG
Seq C2 exon
CTTGTATTAGGGACATTTTCCCCAGAACCGCGTTTGTGGACATCACCATTGACACTGTCATGGCCCCAGATCCCTTTGTCTGTCGCAGCATCTGTACTCACCATCCCAGTTGTCTGTTTTTTACCTTCTTGTCTGAAGAATGGCCAACAGCATCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572:ENSBTAT00000004648:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(38.3=81.6)
A:
NA
C2:
PF0002421=PAN_1=PU(61.9=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACACTTGTCTGTTGAAGAACACC
R:
CTTTCAGATGCTGTTGGCCAT
Band lengths:
270-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]