MmuINT0060081 @ mm9
Intron Retention
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:46334859-46335520:-
Coord C1 exon
chr8:46335411-46335520
Coord A exon
chr8:46335019-46335410
Coord C2 exon
chr8:46334859-46335018
Length
392 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACT
5' ss Score
4.34
3' ss Seq
CAGTTTCTTCCCTTGGACAGCTT
3' ss Score
6.14
Exon sequences
Seq C1 exon
TAAAATGTGTCTTTTGAAGTACACCCGAACGGGGACGCCAACCACAATAACGAAGCTCAATGGCGTGGTATCTGGATTTTCACTGAAGTCCTGTGGACTTTCAAACTTGG
Seq A exon
GTAACTATCATTTTTCTCAATGAGATATTGGTACCATTAAGCCTGAGTGAAGCAGAGACTATGTGCAATGGGTCTAACTTTAAAAACAGCTGATGGTTATACATGAAGCGAACCCAGTAACCTTTTACTGTCTTCAAAGTGAAATGGTTCACTATGTCCTGGAAAGCATTTCCTTCTTAAATTTCAAATTTGTTCTTTTTATAAACAACAACAACAACAACAACAACAGCATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGGTCTTCGGATGAACTTTCCATTTATAATACAATTTACAAACCCTGTCTGGGATGTCTATGATTTTGCTGGTGCCCCTGCCTTCCTAACACAGTTTCTTCCCTTGGACAG
Seq C2 exon
CTTGTATCAGGGACATTTTCCCTAACACGGTGCTGGCAGACCTTAACATTGACAGCGTGGTGGCCCCAGATGCTTTTGTCTGTCGTCGCATCTGCACGCATCACCCCACTTGTTTGTTCTTCACATTCTTTTCCCAAGCATGGCCGAAAGAATCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645-F11:NM_028066:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
NA
C2:
PF0002421=PAN_1=PU(61.9=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAATGTGTCTTTTGAAGTACACCC
R:
CTCTGAGATTCTTTCGGCCATGC
Band lengths:
270-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: