BtaINT0058884 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40260813-40261198:-
Coord C1 exon
chr7:40261067-40261198
Coord A exon
chr7:40260918-40261066
Coord C2 exon
chr7:40260813-40260917
Length
149 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CAGAGTGCTCCTCCTCCCAGTCT
3' ss Score
5.03
Exon sequences
Seq C1 exon
AGAAGTGCTTTGAGCCCCAGTTTTTCCGGTTCTTCCATGAGAATGAAATATGGCATAGGCTTGAGCCAGCAGGTGTGGTCAAGTGCCAGTGCAAGGGTCCAAATGCCCAATGCAAGCCACTGGCCAGCCAGG
Seq A exon
GTGAGTAGACTGGTGGGGAGCTGGGCAGGGACCAGAGTGGAAGGTGAGGAAGAAAGGCTGGCCGGAGGCCAGGTGCTGTGCCAGTGTAAGAGGGAGCTCTCTGGGCCGTCTTTGGGCCTAGGGGTGACTCAGAGTGCTCCTCCTCCCAG
Seq C2 exon
TCTGCCGCACCAACCCGTGTCTCAACGGGGGCAGCTGCCTGCAGGCGGAGGGCCATCGCCTGTGCCGTTGTGCCCCTAGCTTCGCGGGACGTTTGTGCGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003913=fn1=WD(100=80.0)
A:
NA
C2:
PF0000822=EGF=WD(100=86.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCTTTGAGCCCCAGTT
R:
CTACATCGCACAAACGTCCCG
Band lengths:
236-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]