MmuINT0060103 @ mm10
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55421525-55421884:-
Coord C1 exon
chr13:55421753-55421884
Coord A exon
chr13:55421630-55421752
Coord C2 exon
chr13:55421525-55421629
Length
123 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCTCCCCACCCCACCCCCAGCCT
3' ss Score
7.11
Exon sequences
Seq C1 exon
AGAAATGCTTTGAGCCTCAGCTTCTCAAGTTCTTCCACGAGAATGAGCTATGGTTTAGAACGGGGCCAGGAGGTGTGGCCAGGTGCGAGTGCAAAGGTTCTGAGGCTCACTGCAAGCCGGTGGCCAGCCAGG
Seq A exon
GTAAGTGGGTGTGCAGGGACTGTGGGGAGGAGGGCAGAGAGTCAGGAACCCCTGGTAGAAGGCTGGGTGCAATGATGTACACAGGTAAGGCTCAGTTTGCACCTCTCCCCACCCCACCCCCAG
Seq C2 exon
CCTGCAGCATCAATCCGTGCCTTAATGGGGGCAGCTGCCTCCTCGTGGAGGACCACCCACTGTGCCGTTGCCCTACAGGCTACACTGGATATTTTTGCGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492:ENSMUST00000021948:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003913=fn1=WD(100=80.0)
A:
NA
C2:
PF0000822=EGF=WD(100=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGCTTTGAGCCTCAGC
R:
CCAAGTCGCAAAAATATCCAGTGT
Band lengths:
237-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types