GgaINT1028046 @ galGal4
Intron Retention
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5417081-5417562:-
Coord C1 exon
chr24:5417403-5417562
Coord A exon
chr24:5417183-5417402
Coord C2 exon
chr24:5417081-5417182
Length
220 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGA
5' ss Score
7.45
3' ss Seq
AGCCCCTGTCCGGCTGCCAGGAT
3' ss Score
5.18
Exon sequences
Seq C1 exon
ACCACGGCATCGCCCAGCTCCCTCCATGCCTCCGCAGCCAGCAGCATCTTCAGCATCCGCCCCCCGCAGCCTCGGGAGAACGTCCTTGGCATCAGTTTCAAGCCCTACAGCCCTGATTCCATCCCGGCCCCGGTGCCGTGCACGGCCTGCGAGAGCACAC
Seq A exon
GTAAGATGATGGTGGTCTGTGCCGTGGGTTCAGCCCATTCCTGGTCCTCTCCCGGAGAGGGGATGGAAGGAGAAAATGCATCCGTGTGCTCGCTGCCGGCAGAGGGGTGGTGTTCCCTGGGGGTGTGAGGGGAGAGCGGCACACGCTGAGGTCCAGGACGGGGTCTGGGTGCCTCGAGGAGGCTGTGCTCCCCCTGACTCAGCCCCTGTCCGGCTGCCAG
Seq C2 exon
GATCCTCCATGTTCAGAGCTCCCTGCATGAGCCAGCGGCGGCTCGCGCTCATCTTCTGCGTCTCCGTCCTCATCGTGCTGATCGTCGCCCTCATCCTGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273:ENSGALT00000011876:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGCCCAGCTCCCTC
R:
CAGGATGAGGGCGACGATCAG
Band lengths:
252-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]