MmuINT0162667 @ mm9
Intron Retention
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45136500-45138052:+
Coord C1 exon
chr9:45136500-45136872
Coord A exon
chr9:45136873-45137947
Coord C2 exon
chr9:45137948-45138052
Length
1075 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCTACCTCCCTATTCTTAGGTC
3' ss Score
8.95
Exon sequences
Seq C1 exon
AATTCTTCTCCAGCAAGGACACCTCCCCAGGCTTCCCCAGCAAGGACATCTCCAGCAAGGGCACCTCCTCAGGCCTCTCCAGCAAGGACACCTCCTCAGGCCTCTCCAACAAGGACACCTCCTCAGGCCTCTCCAGCAAGGGCACCTCCTCCTCAGGCTTCCCCAGCCCGGGCATCTCCAGCCCGGGCATCTCTAGCCAGGGCACCACCTTCCAGGTCATCATCGGGCAGATCATCATCTGCCAGGTCAGCCTCCACGACATCCTCCCCAACGAGAGTGTACCTTGTTAGAGCAACACCAGTGGGGGCTGTCCCCATCCGGGCATCTCCTGCCAGGTCAGCACCAGCCACCAGGGCCACCAGGGAGAGCCCAG
Seq A exon
GTAAGGGGGCCGCTGCAGGGAGGGCAGAGATCCAGGGCAGATTTGGGCAGAGGGAAGCTCTCGGTGAGCACTCTGCTCCTTGTACCCCTGGGATAATGACACGGGGGGTCAGCCAGAGTGGAACATGGGGAACCTGGAGAAGTGAGGGTAGAAAGAGACCATGATATGACAACCTAAGACAGTGGAAAATTAGGCAAAAAGAGGAGGGGCCAAAAGCCAGGAGCAAGGAGGCAGAGCGCTCACTGCTGAACTCCAGAGTTCTCCAGGCAGAGTGCTGGAGGTCACTCTGCCCAGGGTAGAGATCTGACTTCAAGAGCAAGGGTTCTTGGGTACATGAGGGTCTGTTTGCTTTGGCTGGCCTGTATGTCTGCTGGAGAAGCCAGGGTAGTACAAGGTATGATCAGTAGGCCTGCTCATACGTAAAGGAAGAATGGGAGGGACTCTGGCTCCTCCAAGCTTCCAAACTTGTGGGGGATGAGGCTCAGCAGTTCATCTGCCAAAAAGTCAAGGAGGCCATTGGGCCTCCAGGCATGGTTCTGCCCCTCAGGAAACTGTTTCCATGTACCCCAGACCTCACCCTGCCCCATTGCTTCACCCCCAAATATTCAGGCCTTGTGGCTTTTTGACTGTGAAGGAACACCCAAGGTTTGAGGACCATCCTAGCCTTTCCCTCCCTACCCAGGGTAGGAGAGGCACTTTGGTGGCATGGATTTTAGAATGAGACACTGCATTTGAACCTCTGTCCTGCCAATCACTAGTTTAGTGACTCTGGGTAACTTCTTTCATGTCGATGAACCTTGGTTTCCCCATCTACGAATGTATCTAATAAGACTCAGCTCATACAATGCAGTGAGGATGAACTAGCAGAACACATATGCGGTACCTAGCCTAGAGGAACCTGGGGGAGGGAGTCCATTGGAGGATTATACTGGGGAGGGGTGGAGATGTTTTGTGAGGTGCAGAGCCCTAGGCAGGATGCTGGGGTGAGGGTGGTGTCAGTTTCGCTTCCTTCTGGGCCCTCCACTGTGCCACGCTCCTCCACAACAGTTTTCCTTCCCTACCTCCCTATTCTTAG
Seq C2 exon
GTCTCAGTTTCCCCAAGTTCTCCTGGCAGGAGACCCAGAGGCAGCTGCCACTCATCGGGTGTGTCATCCTTCTCATCAGCCTGGTGATCTCACTCATCCTTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-Tmprss13:NM_001013373:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.896 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCCTCTCCAACAAGGA
R:
AGGATGACACACCCGATGAGT
Band lengths:
349-1424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: