BtaINT0058885 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40260482-40260917:-
Coord C1 exon
chr7:40260813-40260917
Coord A exon
chr7:40260654-40260812
Coord C2 exon
chr7:40260482-40260653
Length
159 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GGAGCCTCCTCTCTCTGCAGACC
3' ss Score
9.29
Exon sequences
Seq C1 exon
TCTGCCGCACCAACCCGTGTCTCAACGGGGGCAGCTGCCTGCAGGCGGAGGGCCATCGCCTGTGCCGTTGTGCCCCTAGCTTCGCGGGACGTTTGTGCGATGTAG
Seq A exon
GTGAGTTAAGGTCTCTAGGAAGCAGAAGCCCTACCCCGACGTGGGAAGGACTTGCAGAGAGGGAGGAGGGGGAGTGGCGCCGTGGGTGAGAGGGCGGCTGGGGGCGGGGGGCAGGGACCAAATCATCACCTAGCGGCGGGGAGCCTCCTCTCTCTGCAG
Seq C2 exon
ACCTCAAGGCGAGTTGCTACGACGACCGCGACCGCGGTCTCAGCTACCGCGGCATGGCGGGGACTACGCTGTCCGGCGCACCCTGTCAGTCGTGGGCCTCCGAGGCCACCTACTGGAATGTGACCGCAGAGCAAGTGCTGAACTGGGGACTGGGCGACCACGCCTTCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.1)
A:
NA
C2:
PF0005113=Kringle=PU(57.8=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACCCGTGTCTCAACG
R:
CAGTCCCCAGTTCAGCACTTG
Band lengths:
250-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]