MmuINT0060104 @ mm9
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55522604-55522990:-
Coord C1 exon
chr13:55522886-55522990
Coord A exon
chr13:55522770-55522885
Coord C2 exon
chr13:55522604-55522769
Length
116 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AGCCATCTCTCTTTCTCTAGACC
3' ss Score
9
Exon sequences
Seq C1 exon
CCTGCAGCATCAATCCGTGCCTTAATGGGGGCAGCTGCCTCCTCGTGGAGGACCACCCACTGTGCCGTTGCCCTACAGGCTACACTGGATATTTTTGCGACTTGG
Seq A exon
GTGAGTAAGACCCCGTGTGGAAAGGCTTGCGGAGGTGGATAGAGAGAATGGAAGTGAACCAGAGGGCTCCAACAGACTCATCCGCCGACTGCAGGGAGCCATCTCTCTTTCTCTAG
Seq C2 exon
ACCTTTGGGCGACCTGCTATGAAGGCAGGGGGCTCAGCTACCGGGGCCAGGCTGGAACTACGCAATCGGGTGCGCCATGTCAGCGGTGGACCGTGGAGGCCACCTACCGGAACATGACTGAGAAGCAAGCGCTAAGCTGGGGCCTGGGCCACCACGCATTTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-F12:NM_021489:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=83.3)
A:
NA
C2:
PF0005113=Kringle=PU(63.3=89.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCCGTGCCTTAATGGGGG
R:
AAAATGCGTGGTGGCCCAG
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: