RnoINT0057481 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9740698-9741087:+
Coord C1 exon
chr17:9740698-9740802
Coord A exon
chr17:9740803-9740921
Coord C2 exon
chr17:9740922-9741087
Length
119 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
AGCCCTCTCTCTCTCTCTAGACC
3' ss Score
12.19
Exon sequences
Seq C1 exon
TTTGCAGGGTCAATCCGTGCCTTAATGGAGGCACCTGCCTCCTCGTGGAGGACCACCGACTGTGCCACTGCCCTGCAGGCTATGCCGGACCTTTTTGCGACTTAG
Seq A exon
GTGAGTAGGACCCCATGTGGGAAAGGCTTTCGGAGATGGATAGAGAGAATGGAAAAGTGAACCAGAGGGCACCAACAGACCCATCCCCTGACTGCAGGGAGCCCTCTCTCTCTCTCTAG
Seq C2 exon
ACCTTAAGGCGACTTGCTACGAAGACAGGGGTCTCAGCTACCGGGGCCAGGCTAAAACTACTCTGTCGGGTGCACCATGTCAGCGGTGGGCCTCGGAGGCCACCTACCGGAACATGACTGAGACGCAAGCTCTAAGCTGGGGCCTGGGCCACCACGCATTCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.1)
A:
NA
C2:
PF0005113=Kringle=PU(63.3=89.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTCAATCCGTGCCTTAA
R:
CCCAGGCCCCAGCTTAGAG
Band lengths:
249-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]