BtaINT0059573 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004095 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr11:105859143-105859638:+
Coord C1 exon
chr11:105859143-105859237
Coord A exon
chr11:105859238-105859520
Coord C2 exon
chr11:105859521-105859638
Length
283 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGACCTGCCTGTTTTCCCAGTTT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTTATGCAGGCTTTGTCCCTCGGTTTGCCTGGGTGATGGGGATGAATTATCGCGATGGGGTCACACAGGCTATGGACGAGTTCGACAAGAGCCAG
Seq A exon
GTGTGTGGACACCACCCCTGGGTGAGCAAGGCTGTCTCCACCCTCTGGCTTCCCTGGGGGAAGCTCTGCCTAGCCCAGAGGCTATCCCTTGCGCTCCCCTCTACCCCCAAGCCATGTCCTTCTGACTAGGTCTTGGCTCCCAGGTCTGGAGTGCCGTGGGGAGGGAAGACCCTTGAGCCACTCACTTCCCAAAATGCCAGCCTTACACCGCCAGGACATTCTGCTCCATGGTTTCCAGCTCGGGAGGCAGGACATGGCAGCACTGACCTGCCTGTTTTCCCAG
Seq C2 exon
TTTCTGCTCAGAAATCCCATCTGTGCCCTGGGTGAGAGGCTGCCCAGCACACACTGGCCCAGCAACACCATCTACAGAAGCCAGGGCCTGATACCCTTCTACATGGGCTTCATACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004095:ENSBTAT00000005347:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF106294=DUF2475=PU(31.0=32.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGCAGGCTTTGTCCCTCG
R:
AGGGTATGAAGCCCATGTAGA
Band lengths:
212-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development