HsaINT0060204 @ hg19
Intron Retention
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:33818]
Coordinates
chr9:140138623-140139188:-
Coord C1 exon
chr9:140139094-140139188
Coord A exon
chr9:140138741-140139093
Coord C2 exon
chr9:140138623-140138740
Length
353 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GCACCTTCCTGTCTCCCCAGTTC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GCTATGCTGGCTTCATTCCCCGTTTCACCTGGGTAATGGGGTTGAATTACCGAGACGGCGTCATGCAAGCCATGGACGAATTCGACAAGAGCCAG
Seq A exon
GTAGGAAAGCGCCATCCAGGGCCTGCTCCCAGCTCACACACACACTTCCTCTCCTGCCTGGCAGCTTCCCTGGAGGGTGCCTTGAAGGCCAGGTTCCCTGAGAAGCCTGAGGAGGGGGCTCTGCCTGGCTCTCTCCTGTCCCCGGAGGTGCCGCCCCAACCCCTCTCTCCTGAGTCTTGCTTGGATCCCTGCACTCAAGTTTTGGAGTCGGGGGTAGGGGGATGCAGAAGGCTGGGAGCATTAGCAGCTTTCCCACGGAGTGCCGGCCCTCCGGCCAGGCCCCCACTGGGACAACTTGACTATCTGTTTGCCTGCCGGGGAGGGAGCTTGTTAGCACCTTCCTGTCTCCCCAG
Seq C2 exon
TTCCTGTTTAGAAACCCCCACTGTGACCTGGGCGAGAAGCTGCCTGGAACACACTGGCCCAGCAACCACATCTACAGCAGCCAAGGCCTGATCCCCTTCTACATGGGGTTCATCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163-FAM166A:NM_001001710:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCTGGCTTCATTCCCCG
R:
TGAACCCCATGTAGAAGGGGA
Band lengths:
206-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)