HsaEX6064265 @ hg19
Exon Skipping
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:33818]
Coordinates
chr9:140138623-140139670:-
Coord C1 exon
chr9:140139541-140139670
Coord A exon
chr9:140139094-140139188
Coord C2 exon
chr9:140138623-140138740
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTACATCTGCCTACCCCCAGGCT
3' ss Score
7.64
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGTACCACTGCCAGAGGGATGAGTACCCACCCCCCGCCCGCCGCCAGCAGGAGACGCTAGATGTGGGCAGCTTCCAGCGGCTGCCGCAGCTGGACCACCCTAACCTAATCCAACGCAAGGCCATCTCAG
Seq A exon
GCTATGCTGGCTTCATTCCCCGTTTCACCTGGGTAATGGGGTTGAATTACCGAGACGGCGTCATGCAAGCCATGGACGAATTCGACAAGAGCCAG
Seq C2 exon
TTCCTGTTTAGAAACCCCCACTGTGACCTGGGCGAGAAGCTGCCTGGAACACACTGGCCCAGCAACCACATCTACAGCAGCCAAGGCCTGATCCCCTTCTACATGGGGTTCATCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.813 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGAGACGCTAGATGTG
R:
CCTTGGCTGCTGTAGATGTGG
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)