GgaEX1023844 @ galGal4
Exon Skipping
Gene
ENSGALG00000008596 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr17:1868553-1870588:+
Coord C1 exon
chr17:1868553-1868649
Coord A exon
chr17:1868839-1868933
Coord C2 exon
chr17:1870471-1870588
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTTCCATCTCCATCCATAGGGT
3' ss Score
10.63
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
CCTGTGAGAGCTGAAGGTGTGACGCTGCCAGCAGCCGAGGATTGGCGGCTCCCCAGGCTGGATGTGCCCAGAGTGATCCAGCAGAAGGTCATCCCAG
Seq A exon
GGTACACTGGATTCATACCGCGCTTCAGGTGGGCCATGGGCACTAATTACCTGCAGGGCGTGAAGGAAGCCATGGCTGAATTTGACAGGCAGCAG
Seq C2 exon
TTGCTGGAGAGGAACCCAATTTACAGCTTTGGCAAGAGATTTCCCCAGACTTACTGGCCTAGCAGCAGCATCTACACCAGCGCTGGACTGATCCCAGCCTATACAGGCTTCGTCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008596_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(10.0=18.2)
A:
PF106294=DUF2475=FE(51.7=100)
C2:
PF106294=DUF2475=PD(35.0=52.5),PF106294=DUF2475=PU(31.7=32.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAGCTGAAGGTGTGACG
R:
GTGTAGATGCTGCTGCTAGGC
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]