RnoEX6015801 @ rn6
Exon Skipping
Gene
ENSRNOG00000010019 | Fam166a
Description
family with sequence similarity 166, member A [Source:RGD Symbol;Acc:1562762]
Coordinates
chr3:2440193-2441219:+
Coord C1 exon
chr3:2440193-2440319
Coord A exon
chr3:2440743-2440837
Coord C2 exon
chr3:2441102-2441219
Length
95 bp
Sequences
Splice sites
3' ss Seq
TAGCATCCACTTAACCCCAGGTT
3' ss Score
4.4
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTATACCACTGCAGGAGGGACGAGTACCTGCCTCCACATCCCCCACAGGAGACACTAGATGTGGGCAGATACCAGCGACTGCCCCAGCTAGACCACCCCAACCTAATCCAACGCAAGGCCATCTCAG
Seq A exon
GTTATGCTGGCTTTGTTCCCCGGTTTGCCTGGGTAATGGGGATGAATTATCGTGATGGAGTCATACAAGCGATGGATGACTTTGACAAGAACCAG
Seq C2 exon
TTTGTGTTCAAGCACCCAGTCTGTACGCTGGGTGAAAGGCTGCCCAAGACCCACTGGCCAACCACCACCATCTACAGAAGCCAAGGCCTCATTCCTTTCTACATGGGCTTCATCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010019-'9-18,'9-17,11-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF106294=DUF2475=PU(31.0=32.5)
Main Skipping Isoform:
ENSRNOT00000013335fB5190
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCCCACAGGAGACACTA
R:
CTGTAGATGGTGGTGGTTGGC
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]