BtaEX6047521 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004095 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr11:105858822-105859638:+
Coord C1 exon
chr11:105858822-105858948
Coord A exon
chr11:105859143-105859237
Coord C2 exon
chr11:105859521-105859638
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTGACCTCCTCCTTCCCCAGGTT
3' ss Score
11.5
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGTACCACTGCAGGAGGGACGAGTCCCCACCCCTCGCCCACTGGCAGGAGACACTCGACGTGGGCAGGTTCCACAGGCTGCCGCAGCTGGGCCACCCCAAGCTGATCCAGCGCAAGGCCATCTCAG
Seq A exon
GTTATGCAGGCTTTGTCCCTCGGTTTGCCTGGGTGATGGGGATGAATTATCGCGATGGGGTCACACAGGCTATGGACGAGTTCGACAAGAGCCAG
Seq C2 exon
TTTCTGCTCAGAAATCCCATCTGTGCCCTGGGTGAGAGGCTGCCCAGCACACACTGGCCCAGCAACACCATCTACAGAAGCCAGGGCCTGATACCCTTCTACATGGGCTTCATACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004095-'3-7,'3-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF106294=DUF2475=PU(31.0=32.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCAGGAGACACTCGA
R:
AGGCCCTGGCTTCTGTAGATG
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]