HsaEX6064265 @ hg38
Exon Skipping
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166 member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr9:137244171-137245218:-
Coord C1 exon
chr9:137245089-137245218
Coord A exon
chr9:137244642-137244736
Coord C2 exon
chr9:137244171-137244288
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTACATCTGCCTACCCCCAGGCT
3' ss Score
7.64
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGTACCACTGCCAGAGGGATGAGTACCCACCCCCCGCCCGCCGCCAGCAGGAGACGCTAGATGTGGGCAGCTTCCAGCGGCTGCCGCAGCTGGACCACCCTAACCTAATCCAACGCAAGGCCATCTCAG
Seq A exon
GCTATGCTGGCTTCATTCCCCGTTTCACCTGGGTAATGGGGTTGAATTACCGAGACGGCGTCATGCAAGCCATGGACGAATTCGACAAGAGCCAG
Seq C2 exon
TTCCTGTTTAGAAACCCCCACTGTGACCTGGGCGAGAAGCTGCCTGGAACACACTGGCCCAGCAACCACATCTACAGCAGCCAAGGCCTGATCCCCTTCTACATGGGGTTCATCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGAGACGCTAGATGTG
R:
CCTTGGCTGCTGTAGATGTGG
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains