MmuEX6099426 @ mm9
Exon Skipping
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25076322-25077301:+
Coord C1 exon
chr2:25076322-25076448
Coord A exon
chr2:25076839-25076933
Coord C2 exon
chr2:25077184-25077301
Length
95 bp
Sequences
Splice sites
3' ss Seq
TACCATCCACCCATCTCCAGGTT
3' ss Score
8.83
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTATACCACTGCAGGAGGGATGAGTACCTGCCTCCACACCCCCCACAGGAGACACTAGATGTAGGCAGATTCCAACGACTGCCCCAGCTAGACCACCCCAACCTAATCCAACGCAAGGCCATCTCAG
Seq A exon
GTTATGCCGGCTTCGTCCCCCGGTTTGCCTGGGTAATGGGGATGAATTACCGTGATGGTGTCACACAAGCTATGGATGACTTTGACAAGAACCAG
Seq C2 exon
TTCGTGTTCAGACACCCAGTCTGTGCCCTGGGTGAAAGGCTGCCTAGGACCCACTGGCCAAACACCACCATCTATAGAAGCCAAGGCCTGATTCCTTTCTACATGGGCTTTATCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF106294=DUF2475=PU(31.7=32.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAGGGATGAGTACCTG
R:
TGTTTGGCCAGTGGGTCCTAG
Band lengths:
182-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: