BtaINT0059574 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004095 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr11:105859521-105860113:+
Coord C1 exon
chr11:105859521-105859638
Coord A exon
chr11:105859639-105860024
Coord C2 exon
chr11:105860025-105860113
Length
386 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
AGCAGCGTTGCCCCTCACAGCCA
3' ss Score
4.46
Exon sequences
Seq C1 exon
TTTCTGCTCAGAAATCCCATCTGTGCCCTGGGTGAGAGGCTGCCCAGCACACACTGGCCCAGCAACACCATCTACAGAAGCCAGGGCCTGATACCCTTCTACATGGGCTTCATACCCT
Seq A exon
GTGAGTGCCTCTTGGAAGATGTCACGGCGACAGGCCACTGTGGGGCGGGGCCAGGGGCTGGGCCCTCTTAGCCAGGCCTAACCTCAGGCAAGGTTCCCTTGGGACAGGACGACCCCAAATGACCCAAAGTTCCCTCAGTGCCCCGGCTTCCCCCAGTGCACAAGGGGCTCACTGACAGCCCTGACTAAAAGCCAAGAGGCCAAGTGCCTCCAGACCACGCTGGCCTCCTGGGGGGTTTCCCGTGCACAGGCTGGGCCCACCTCTGGGAGGCGACCCCCGGCTCCCCAGTCTGCATGTTCACAGGCCCCTGGCCCCTGCAGCAGCCCCGCGTGTGCCCTACGCGTGCGGTGAGCCCAGGGGCTCAGCAGCAGCGTTGCCCCTCACAG
Seq C2 exon
CCATGCAGGACAACTACGCACTGACCTTCGGCAACAGCACCCGCAAGGCCTATCAGAAGGAACTGGAGAGGCGCAGCCGGACACTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004095:ENSBTAT00000005347:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(31.0=32.5)
A:
NA
C2:
PF106294=DUF2475=PD(66.7=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTCAGAAATCCCATCTGTG
R:
TCATAGTGTCCGGCTGCGC
Band lengths:
206-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development