MmuINT0061081 @ mm10
Intron Retention
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25221664-25222280:+
Coord C1 exon
chr2:25221664-25221781
Coord A exon
chr2:25221782-25222082
Coord C2 exon
chr2:25222083-25222280
Length
301 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TAAGCCTTTCTTCCTTGCAGCCA
3' ss Score
8.95
Exon sequences
Seq C1 exon
TTCGTGTTCAGACACCCAGTCTGTGCCCTGGGTGAAAGGCTGCCTAGGACCCACTGGCCAAACACCACCATCTATAGAAGCCAAGGCCTGATTCCTTTCTACATGGGCTTTATCCCAT
Seq A exon
GTGAGTATTGCTCCCTACCAGAAGCCCACACTTCCTTCCAAAGGACAAGTTTATATGACACACCAAACCTGTGACTGGGTCAAATGACCCTGCTTTATCCTCCACACTTGCCTATAACCAGTTGTCAGCCCACTGGCCAGTCCCAGTTTGAACCTGGATTAATCACCCAGTCATTATGGGGTTCACTAGTCATTCCTGTTAGGCCATCAAAGCTACCTCCATGCTAGATTGTAGAGAAGCTGCTCTGACCTCTCTAGTGTGCTCACCGCAGGTACTCAGCTTAAGCCTTTCTTCCTTGCAG
Seq C2 exon
CCATGCAGGACAACTATGCACTGACATTCGGTAACAGCACCCGAAGAGCCTATCAGAAGGAATTGGACAGGCGAAGCCACACACTATGAATTGCTTTAATGGTGGTATCTGTACAAGTGATGTCAGGACACAGGACAGCAAATGCACAGTGGACATGGCTAGCAGACAGGCTGTGAATGAATAAAGAGTTCACACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969:ENSMUST00000028346:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCCAGTCTGTGCCCT
R:
TGTGAACTCTTTATTCATTCACAGCC
Band lengths:
302-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types