BtaINT0059576 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032509 | FAM166B
Description
Bos taurus family with sequence similarity 166, member B (FAM166B), mRNA. [Source:RefSeq mRNA;Acc:NM_001038513]
Coordinates
chr8:60197476-60197992:-
Coord C1 exon
chr8:60197769-60197992
Coord A exon
chr8:60197682-60197768
Coord C2 exon
chr8:60197476-60197681
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
TTTGCCCCCTGCCCACCTAGGTT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTACACTGGACACTGCCCACTACTTCGGTTCAGCATGGGCCAGACCTACGGACAGATGACTGGGCAGCTACTTCGCGGCTCTCCTGGCCTCGCCTGGCCCCCTGCCCACCGCACACTTCTGCCTCCCATTCAGCCTCCAAGATCCCCCGAGCCTCGCAGGAGAAGCCTGCCTGTCAGGCCTGGACACGAAAGGCTCAGCTCCAGCATGGTCCCCGGGTACACAG
Seq A exon
GTTCGGACACAGGTATGAACAGGGGCCCCCATCCCAGAACACGGGCCCCACACTCTAATGCATCTTCTTTGCCCCCTGCCCACCTAG
Seq C2 exon
GTTTTGTGCCACAGGCACAGTTCATCTTTGCCAAGAACTGCAGCCAGGTCTGGGCTGAGGCTCTGAATGGTTTTACTCAGAGGAACGGAGGACAGGGGAGTCAGGAGCTGCCCAAAGAGGCCAAGGGAGAAAAAGATGTGGAGAAAGACCAAGAGCCAAAGCCGGAGGTGGAAAAGGAGCCGGAGCTGGGGCAGGAGGCGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032509:ENSBTAT00000046106:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=NA C2=0.681
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(88.9=73.7),PF106294=DUF2475=PU(13.4=11.8)
A:
NA
C2:
PF106294=DUF2475=PD(85.1=82.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCAGCCTCCAAGATCCCC
R:
AAACCATTCAGAGCCTCAGCC
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]