BtaINT0061140 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26896185-26896886:+
Coord C1 exon
chr7:26896185-26896307
Coord A exon
chr7:26896308-26896754
Coord C2 exon
chr7:26896755-26896886
Length
447 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTATTGCACATATTCTCTAGACC
3' ss Score
5.84
Exon sequences
Seq C1 exon
ATATCAATGAGTGTGCCCAGAACCCACTGCTGTGTGCTTTCCGCTGCATGAACACCTTCGGGTCCTATGAATGCACGTGCCCAATTGGCTATGCCCTCAGGGAAGACCAGAAGATGTGCAAAG
Seq A exon
GTAAGGCCCCAGACCAGGAAGGATCAGCTCATTATTTGTGATGCCAGAAATATATTTTAATGATTTTGTAGCTCTCAGCTGTCTTCTTGTAGAGCTGTGCAGAAATATATTCTTTACAGCATTGCTGGTAGATTTCCGTATCTAGATAACAAGATACTTGATAGTCTGTCCAGTCAAGTCAAAAATAAAGATGTCACATTCTCGAGCTCTTACTAAAGCAAAGATAGCCCTTCCCTAAACTTTTTATCTTGATGACCAGTGCTGAAATTTTTATAACTCTAGAATATAGCCAACAGTTGAGACTGGGCTCCTTTCTCTGTGGCATAAGAAGATTACATGTTAAAAGCCAGAAGACCAAAAGTATGACTTCAAAATACTCAAGCATGATATACCCTGTTCATGAATTTGTCTTATTCTTCTGTTTTTCCTATTGCACATATTCTCTAG
Seq C2 exon
ACCTGGATGAATGTGCTGAAGGGCTGCATGACTGTGAATCGAGGGGCATGATGTGCAAGAATCTGATTGGCACCTTCATGTGCATCTGCCCGCCTGGGATGGCCCGCAGGCCTGACGGAGAAGGCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:88
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAATGAGTGTGCCCAGAACC
R:
CCACACAGCCTTCTCCGTCAG
Band lengths:
254-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]