GgaINT0062446 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55662881-55663552:-
Coord C1 exon
chrZ:55663430-55663552
Coord A exon
chrZ:55663013-55663429
Coord C2 exon
chrZ:55662881-55663012
Length
417 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
AAATATATGTATTTTTCCAGATC
3' ss Score
7.57
Exon sequences
Seq C1 exon
ATATAAATGAGTGTGCTCAGAACCCCTTGCTGTGTGCTTTTCGATGTATCAATACTTACGGGTTCTATGAATGCACCTGTCCAGTTGGCTATGAACTGAGAGACGACCAAAAAATGTGCAAAG
Seq A exon
GTAATGACTGAAATGTAAACTTCTCCACACCTTCCATCACCTTGTGTCAGCGGAAGAGTATTCCAAATATTTCAGTGCATCTCACATTTATTCTCAGTGAAATGCAGCAAAAAGCAGACGATTATTTTCTCTTTAGAAACTTAAGTAAGACCAAATTTACGTAAGACCAGTATGTAGTGCTTTGTGTATTCATGCTGTGGGATGTAAAGACAAGAACATCAAGATGGTGAAGTTCATCCTTTAACAACTCACAAAGATTATTTCTATAACTGCAGTTAAGCATGGCTCTCAGATTTTTTTCAGTACTTGTCTGCTAGGAAAGTCTAGATGTTATTTTTCTTGAGAAAGTGCTTGTTGTCTTCAGTAACTGAAGCTCTTGCAAAGATCTTCAAACACAAAATATATGTATTTTTCCAG
Seq C2 exon
ATCTAGATGAATGTGCTGAAGGTCTCCATGACTGTGAATCAAGAGGCATGATGTGCAAAAATTTGATTGGTACCTTCATGTGCATTTGTCCTCCTGGAATGACACGGAGACCTGATGGAGAAGGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTGCTCAGAACCCCTTG
R:
TGTACAGCCTTCTCCATCAGGT
Band lengths:
246-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]