BtaINT0061141 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26896755-26900295:+
Coord C1 exon
chr7:26896755-26896886
Coord A exon
chr7:26896887-26900169
Coord C2 exon
chr7:26900170-26900295
Length
3283 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TATTATTTGTTTTTCTAAAGATG
3' ss Score
6.95
Exon sequences
Seq C1 exon
ACCTGGATGAATGTGCTGAAGGGCTGCATGACTGTGAATCGAGGGGCATGATGTGCAAGAATCTGATTGGCACCTTCATGTGCATCTGCCCGCCTGGGATGGCCCGCAGGCCTGACGGAGAAGGCTGTGTGG
Seq A exon
GTAAGGTTGTACAGGACGGTGGCTGCTTGCTTAACACTCCTACCCCCAGTCAGAAACATATGAACTTCAGTTATCACAGTGGAAAATACGGTGTTTTGTTTTCTGTGCAAATAGCCAAAGAGATCAAAAACTGCAAGAATCTGTTCAGTTCCTAATACAATATATGCAGAAGGTAAAATATTATTAATCTTTTCTATCATTAATTGATTTCTGTAGCAACTTGGAAAATCTTATGCTCAACATGAGAAGTTTTCCAACATTGTGCATTGTCAGGAAAAATTTTTTAAAAAGAAAGAAAATAAATGTAAGATTTGTAGCAATCAGATCTTTTTAGATGCATTTCTGTCATGCACTTTGAATTCAAAGGAGACAACTGAAACACTAATCAAAATAAAGATAACAGCATTAGGATAGGATTAGATCACAAAGACGGACTTAAACCCTCATATTCTAGAAACAAGAAACACTACAATTTTTTAAATCCATAAATTAGTTTAATACTTTTGTATATACTTTAAAATGTATGCAGAAAGTTTCCTAAAAGAAAAAAAATACCTTTAACAAGAAAAAACATAGTGTCAGAACGCTAGGAGCAAAGTGAGAATTCTTAAAGCTTCCCAGGGAGCAAAACCAGATTTCCTACAAGTGGCAATTAACAGTGGGTAAAATAAAACAGTGGATCAGCAATGTTTTCAGGGCATTCTAAGGGAAAATAATTTTCAACTAAAACTTTATATTCAATCTAGTGATAAAACAAAAATATCACATTGTCAGAAATGCGTTTTAGAATACTTATCACCCACATACCCTCTTTATCTTATTCCAAACTGTATCCTCCAATATATTTTTTAAAGTTAATTCAAGAGGAAGCAATGATAAGCCAAGAAACCAGTAACCCTGATTATATGGTTTAAATAAATGCTGGTGTTTCATAAAAGAAATACGACAAACCAAAATTTCTAGACCGTGTCAGCATGGCAGGTAGCACAAGGAGAGAGAAGAAAGGAGTAAACTCATGCCAAGGGTACTTACTATGGCCAGAAGCTATTGAAACAGATACTTCTTGATTTAATAGAGAACTGTTCATTAACAGTGTGTTGAAGTTGTCTCATGGCTACCACTGGAAGAATAGAAGATTACAACTTCTAGACATGAGTTGGGGATGACAGTAGCACAGAGAAAAAATTAGACTAACCTAAGAAAACGAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTTTGGGCTCCAGAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGACAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCGCCAAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTGATGCTGGGAGGGATTGAGGGCAGGAGGAGAAGGGGATGACGGAGGATGAGATGGCTGGATGGTATCACTGACTCGATGGACGTGAGTCTGGGTGAACTCCGGGAGTTGGTGATGGACAGGAAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTTGGACACGACTGAGCGACTGAACTGAACTGAAGAAATATTAAGAGAAGGGGACAAGTAGCCTGCTAAATATTAAACAGTATAAAGTGACAAGACTCCGAACATATCAGTAATCACCATAGATAGAAACAGTTTAAATTTCTGGTTAAAAGGCAAATGTACTTTTAAATATTCTTTTAAAAGTGCAGCTTGGTACTTTTTACAAGACATGTACCAAATCAAAATGTAAGATAGATGGAAGATAAAGGGGTGGAACAAGATATCCAAGGCAAATGTTGATGAAAAGCAAGTGCATGCAAAATAAATATTAATAAATTAAAGATTAAAAAGCATAAAGATGAAAGGAGAAATTCATCAAAGGGATTTGTCATGAGCTCTCATCGGAGAGGGCAATGGCAGCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCACAAAGAGTCGGACACGACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACGGAGTTGGACATGACTGAAGTGACTTAGCAGCTCATGCCTCTGACAACATTGATTTGAAACATACCTCAAACAAAATTTACAAAATGTCAAATTAATGCAAGTAAAGATGTGGGAATTTGAATGTAACAGTTTTGTTCTGATATATTTATTTGTCAGAAACCAAAAGAGCAGTACTATCTAAATTCCTTCTTCTCTAGCTGCCCTAACCCCCTGCATGGCTCCTGTGATTTTCACTCAAGTCAGTGGAGGAGCTTGTCCTTTATCCCTGGCCTGAGTGCCCTTCACCCTGCTCTCCACCTCTCCCTCACACCTGCCACTGCTCAGCCCTCAGCCTCTCTTTCATGTCACATGAATTGGTATCTTCTTTCCCAAAGTTCTTTACTTACTCCCCGTCAGTAATCCTTTATGGAGCCACTTTTCCAATTATCCATCAAGCATCACCTCTTCCCTGAAAAGTGGAAGAGAGAAAGAGAAAAGCAGCTGAGGGTGGGGGGGAACACTTTGTTAACCTAGAGCCTATCTTGGAAGGATGTAAGTAAGTAAAATAGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTGTAGCTTACCAGGCTCCTCTGTCCATGGGACTTCCCAGGCAAGAGGATGAGGTAAATTTAAATATGATAAATTTAAATGTAATATTTTTAATATAATACTATAAATTTAAATATAAATTAGTATTCTATCATATTAGCATTTTGATGAAGAAGGTTTAAGCAAGATATAAACCATTAGAAGATAAATGTTTGTAAATGATAAACTTTACAGTCTATTCATGACTCATATTATTTGTTTTTCTAAAG
Seq C2 exon
ATGAAAATGAATGCAGGACCAAACCAGGAATCTGTGAAAACGGGCGTTGTGTTAACACTATTGGGAGCTATAGATGTGAGTGTAATGAAGGCTTTCAGTCCAGCTCTTCTGGCACTGAGTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:89
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]