GgaINT0062447 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55662057-55663012:-
Coord C1 exon
chrZ:55662881-55663012
Coord A exon
chrZ:55662183-55662880
Coord C2 exon
chrZ:55662057-55662182
Length
698 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CATTTGGTATTTTTGTAAAGATG
3' ss Score
2.43
Exon sequences
Seq C1 exon
ATCTAGATGAATGTGCTGAAGGTCTCCATGACTGTGAATCAAGAGGCATGATGTGCAAAAATTTGATTGGTACCTTCATGTGCATTTGTCCTCCTGGAATGACACGGAGACCTGATGGAGAAGGCTGTACAG
Seq A exon
GTAAAGCATAGAAAAGAAAGAAGACCTCTGATGCAATTCCAACAAGCAAACTATTCTCTGTATGTGTGTTTAATGAACTTGAAAATAGCAGTTTATGAAGACGCTTAAGATATCTGTTAGCATCCAACATCTTAAACTTACTTTGTATTTTCAGGACTTGAGCCTTATCTGAAAGTAGTACTAAAGGATTAGGAATTGTTTTAGAAGAAAAACTTTGTTTTTGTTTCTTTACTTGTCCAGCAAAGTCAGGAAGTTTTCAGACACTTGTTAAATTTAAAGCACTAAGTAGCCAGACGAAAGTGACCTTATCTGGTAAGTAAGAAGGAAAATTATTGTAAATAGTAAGTTATATTTCCTTCAACCACAATACTGTCTATAAATAATGTGGCAGTTCCTTAAAGAATTAGAACTATGAAATTTTCATGTAACTGTTAGGTTTTATATATAAAAGCCACAGAGAGCAAGAGATTTGGATCCTACCATAGTTCAAAATCTCTGTTCGCTATGTACGCAGAGAACAGAAGTAGAGCCTTCATCCTAGATGCAGAATACAAGGCATGGAATAAGAGGTCTTCCTTCTGCTTGTTCAGTTGTTGATTTTTCTACTTCTTGCAAATGTTATGCAAAATGCTGAATGCATTCTACAGATCTGACATGTTTTCTTTTAACAATAACTTGCATTTGGTATTTTTGTAAAG
Seq C2 exon
ATGAAAATGAATGCCGTACCAAGCCAGGTATCTGTGAAAATGGTCGTTGCATGAATGTTATTGGGAGCTACCGATGTGAATGTAATGAAGGATTCCTGTCAAGCCCATCAGGCATTGAGTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGATGAATGTGCTGAAGGTCTCC
R:
AGACACTCAATGCCTGATGGG
Band lengths:
254-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]