BtaINT0061145 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26902965-26904823:+
Coord C1 exon
chr7:26902965-26903090
Coord A exon
chr7:26903091-26904700
Coord C2 exon
chr7:26904701-26904823
Length
1610 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
CTCACATCACTTTTACTCAGATC
3' ss Score
5.64
Exon sequences
Seq C1 exon
ATATTGACGAATGTAAAGTCATGCCAAATCTCTGCACCAGTGGTCAGTGCATCAATACCATGGGCTCCTTCCGGTGTTTCTGTAAGGTTGGCTACACCACAGACATCAGCGGAACCTCGTGCGTAG
Seq A exon
GTAAGGAAAGACAAGGCATCTCTGCGTCTGAGTGGTCGTTACCTGCTGTTTTCTGCAAGTCCTTTACTGTCAGTAGAATATCTTTATTATGGTGTTTGGATTGTACATTTTGCTAAAGTGATGCTATTCCTTTCATTAGTGCGGTTCTTAATATCACTGGAGTTGTCCAAGGCCTTGTCTAGTAATGTGAGACATAGAACTATTAGATTTATCAAACAGTCTGTAAAGTTAGGGAAACATTAAAATTACTTAAAAAAATATACTTTCAACATTTTACATTTAGTTTAAAATGTATAGAGGCACGTTTGTTTTGTCATTTTTTAATGAAAGACCAGGACTTTTGATTGTGAAAGTATGTTTTTGCATATGGAGAGAATGCTTTTTGCTTGTTTCTCGTTGTAGTTATTTTTGCATAAAATATACCAATTAAGCATCATCATCTAAAATTTCCAGTTGCAAAGCAATCTCAATACAGAAAACCTTCTACACTTTTACAATCTCTTTTTCTAATTTATTTTACTGTCTCATCCAAGGAAGGGGTGGTAGCTTGGTGCTATTGAGTCTTTCCAAAATATTTAGTTTTCATTAAAGAAAAAAAATCTTTTCTCCTTCATAGTTCATCAGCTTAATATCAACTTGTTTTGATAACAAGCACATCTGGCATGAAAAGGTTAAGAAGAACCAACCTAAATCTTAGTAAGCATTCAACTCACTTGTTTGGGCAAGATAGTAATAGAAACTAGGCTATCAGTCACGAGCTTTTAACATTCTTTGGGCATCAATCAATGTCTTTTATAGGGGAAGTGGAGATGGTTTGCTGTCAGAGTCCTAGCAGAAAAAAGGGTGGCATATTGAAATGAGGACAGTTTAAGGAGACTTGTTTTTTTAACAAAAGGACAGTGTATAAAGATGTAAGCAGAAAATGCTAGGACTAGTGCTGAGTTCTGGGGCTGTTCCACCTCTGGGCCAAAGATAAGAGGGAAGGATTACTGAAACCTAGAAGATGGAGAAAATTGTTCCCAGAGGCCTGCCTTTAGAGCACCCGTGACCTCTGACCCCATGACTCAGTCAGCTTCAGCCCATCTTGCGAGGAATTAAGGACCAGACTGAAGACAGAGGGCAGGAGGGCCTGCTAATGGTGTCTGTGTGCAGTTCAGCCTCCTGGGCCCGAGAACAGGGTGGACCCGGGTAAGGACTGCAGCTGGAAGGCGAAGTGGAAGGTCTCCCACACAATCTGTGATGCCAAACAATTCCTGGGGAAGTGTCAGCTCAGAGACTGAGAACATCCGCCACATCTGCATGTCAAAGAGAAGAAACTCTAACCTTCAGGTTTATGATTCTCAAACTGTAAACCGAAGAACACCAATCTAAAAAATCTAGTGTCTTTTTTTGAACCCAGTTGTCTGGATATTTCAATATTTGCCCAAGAATCACCTGACAAAGTTAAACCGGTAAATTACTTTAGAGAAAATTGTTCTGTGCCTCATTTCTCTCTGGCTATTTTCCATTTTAAGTTGAAGAAGAAAACAGTGAGTGAGAATATGGAGGGAGGAAAGAGACTGGTCGTTCCTTCTAACCAGTAATTTAATCCTCACATCACTTTTACTCAG
Seq C2 exon
ATCTCGACGAATGTTCGCAGTCCCCAAAACCGTGCAACTTCATCTGCAAGAACACAGAGGGGAGTTACCAGTGCTCGTGTCCCCGGGGCTACGTCCTGCAGGAGGACGGGAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:92
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACGAATGTAAAGTCATGCCA
R:
CTTTGCAGGTCTTCCCGTCC
Band lengths:
246-1856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]