BtaINT0061186 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18073352-18074028:-
Coord C1 exon
chr7:18073946-18074028
Coord A exon
chr7:18073451-18073945
Coord C2 exon
chr7:18073352-18073450
Length
495 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
CGCCGCCTGCTGCCCTCCAGCCA
3' ss Score
6.52
Exon sequences
Seq C1 exon
GCCTAACGTGTGCGGCTCCCGCTTTCACGCCTACTGCTGTCCTGGCTGGAGGACGCTGCCCGGTGGGAACCAGTGTGTTGTGC
Seq A exon
GTGAGTGCCGCTGCCTTCTGGGGGGCTGGGGGCGGGGGTGTATGGAGTTAAGCCATGGAATTGGCCTTGCCTGTGTCCTCAGGCTCCCAAGCCACCCAATCATGTTTCTTTGCCTTACAGCTTCCCTGTGTCTGTCTGCTTGTCAGTCTGTCTGTCTTTCTGTCTTGGTCTTTCTCTAAGTCCCTGTCTCTGTGTCTATCTCTGTCTGTCTTTTTCTCTGTCTCTTTTTGTTTCTCCACCCACACCCCATTCTAGTGGGTCTGGAATCTGACTCTGTTCGCAAGAGACCTTCCCTCTCACCGCCCCCCTACCCCAGCACAACAGCCAGCATACCAGTACCCTCCAACTTCTGTCCTTACTGCTCAGTGCTTCGGGCCCAAAGAACACCTCTGTCTCCCCGCGGCTCCAGCAGAGCTTCGGTCCTCCGGGCCCACAGGGGGTGGGGATGGTAGAAGATTTGAATCCTGGCCTTGACCGCCGCCTGCTGCCCTCCAG
Seq C2 exon
CCATCTGTAGGCACGCCTGTGGCCAGGGCTTCTGTTCCCGACCCAACCTCTGTGCCTGCGCTGATGGGAAGCTGGCCCCCAGCTGCGGGGTGAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]