BtaINT0061203 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18019935-18020982:-
Coord C1 exon
chr7:18020860-18020982
Coord A exon
chr7:18020070-18020859
Coord C2 exon
chr7:18019935-18020069
Length
790 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CAACCCATGGTCACCCACAGATG
3' ss Score
6.03
Exon sequences
Seq C1 exon
ACATTGATGAGTGCTCCCTGAACCCCCTGCTCTGTGCCTTCCGCTGCCACAACACCGAGGGCTCCTACGTGTGCACCTGTCCAGTCGGCTATGCGTTACGAGAGGATGGGGCCATGTGCCGAG
Seq A exon
GTAGGACCCGCACAGGCAGGTGGCGGATAGACAGGGCGCTGGGGCTCGCCATACTTCGGTCCCGAGAGAAAATGAAGAAATAAGAGCTGTGCCTCCAAGAGTGGGAATGAGTACTAAGTGATAAAGTGACGGGAGAGCTGAGACAAGTGAGGTGCAATGGGTGCTCTTTTGTGAGGGGTGGTTCTGTATTTTTATGAAAGGGGAGCATCTCCTCAGTCTAACAGAACAGGACTGTGGCTCAGGAGGCCTCTCTGGTGGTGACTGGACATGCCCTGAATGGGCTGGCACAGTGGGGACAGTGACTGTTCCCTTCCCCCCTGGGGACATGTGGAAATGTCTGGAGATACTTTTTATTGTCACAGTTGAATAGAGGTGGGGGTTACTACAGGCATCGGGTGGCCAAGGTTGCTGTTCAGTATCCTACACTGGACAGAAGAGCCTCCCACCACAAAGAATTTTCGAGTCCCAAATGTCCATAGTGTAGAGGGTAGAAACCCTGGCCTGGGACTTGGTCCCTCAAGGGCTGTTTCAGGGTCAATGTTCCAGGGACCATGGTGAAGGTCATACAGATTCAGAGACCCTGATGTGGGCAGGGGATGCAGGTGTTTGGGGCAGTCCTGACCATCCCCTCCCACTTGACTTCCCAGGAAGTCTGGGATAGGTGGGGGAGGAATGGACAGTGGGCAGTGCTTCAGGTACCTCTCTGGAAGGCCATTGTAGGGTGGGAGAGTCCAGATTTTCACAGCCTGGAGCTGAGCCACGAGCACCATCAACCCATGGTCACCCACAG
Seq C2 exon
ATGTGGACGAGTGTGCAGACGGTGAGCAAGACTGCCACGCCCGGGGAATGCTGTGCAAGAACCTCATTGGCACTTTCGCCTGCATCTGCCCCCCAGGCATGAGGCCCCAGTCAGGCTCCGGGGAGGGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGATGAGTGCTCCCTGAACC
R:
CTCCCCGGAGCCTGACTG
Band lengths:
246-1036
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]