BtaINT0061204 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18019625-18020069:-
Coord C1 exon
chr7:18019935-18020069
Coord A exon
chr7:18019751-18019934
Coord C2 exon
chr7:18019625-18019750
Length
184 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CCTTATCCCTCCTGCCTCAGATG
3' ss Score
8.44
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGCAGACGGTGAGCAAGACTGCCACGCCCGGGGAATGCTGTGCAAGAACCTCATTGGCACTTTCGCCTGCATCTGCCCCCCAGGCATGAGGCCCCAGTCAGGCTCCGGGGAGGGCTGCACAG
Seq A exon
GTACAGAGGGCTTCCCCACCCTATCCCACCACAGACAAGAGAGTTCAAAGCCAGAGGGCACGCGAGGAGGTAGACATGGATCCTGGAGGTGGAGGGCAGACATGGACCCTGGAGGTGGAGGCCAGGTCAGAGGACTCTGGCCTCCCTGCCTCCCTGCCGGCCTGCCTTATCCCTCCTGCCTCAG
Seq C2 exon
ATGATGATGAATGCCGTGCCCAGCCCAGCCCCTGTGCCAACGGCCACTGCATCAACACCGTGGGCAGCTTCCACTGTGACTGTGACGAGGGCTACCAGCCCAGCCCCAGCCTCACCAAGTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACGGTGAGCAAGACTG
R:
CTGGCACTTGGTGAGGCTG
Band lengths:
246-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]