GgaINT0145587 @ galGal3
Intron Retention
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:359592-360375:+
Coord C1 exon
chr28:359592-359723
Coord A exon
chr28:359724-360249
Coord C2 exon
chr28:360250-360375
Length
526 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TCACCACACTTCTTTCCTAGATG
3' ss Score
8.59
Exon sequences
Seq C1 exon
ATCTGGATGAGTGTGCAGAGGGTCTGCACGACTGCGAGTCTCGAGGAATGCTGTGCAAGAATCTCATTGGCACCTTCATGTGCATCTGCCCACCAGGAATGCAGCGCAGACCTGATGGAGAGGGCTGCACAG
Seq A exon
GTACCAAGGGCCGGGCTGGGACCTGCATGCAGATGCTTTTGCTTATGTCCTGTCAAACAAGTCCTTCCTGGGACTTCCCGTGTGTCACAGCTTCCAGTCCTATTAGATGCCCGCACACCCAGTCTCTGCTCATCTGTAGACCCATATCCAGCCCAGGATGACACAGCATTACACCTTGTGTTGTTTTTCTTGAGTCTTTCCATGTCTGTGTCAAGCCTCTTTGCGCTGTGCTGCTTTCAGAAGTGCTGGCGCATGCACACCTGCACAGTGGTAGGGACAGGAGGAATGCAGAGCAGGCCCAGCTCCACTCCCACTCTGGCAGCTCGGCCACCTGCAGGTGGACAATATGGCAAGCAGGGAAGTTGGGCACTCTGCTTTAGGGGAAGTCCTGGGAAAGTGGGTGTGTTTCTCAGCTGTCCGAGGATGTGGGAGTGTACCTCAGAGGACTGCGTGGGTTTGTTTCAAGCTGAGTGGTAGCATGGAAACTCATGGAAAGCTGAAATTTGTCACCACACTTCTTTCCTAG
Seq C2 exon
ATGAGAATGAGTGCCGCACCAAGCCTGGAATCTGCCCCAACGGCCGCTGCATCAACACGGTGGGAAGTTACCGCTGCGACTGCAATGAGGGTTTTGAAGTCAGTCCCTCTGGCACAGAGTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATGAGTGTGCAGAGGG
R:
TCTGTGCCAGAGGGACTG
Band lengths:
249-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]