BtaINT0061209 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18016437-18016847:-
Coord C1 exon
chr7:18016725-18016847
Coord A exon
chr7:18016554-18016724
Coord C2 exon
chr7:18016437-18016553
Length
171 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
CGGGACCTTCTGTGTCACAGACC
3' ss Score
7.05
Exon sequences
Seq C1 exon
ATGTGGATGAGTGCAGCCAGGCCCCCACGCCATGTCCCTTCCTCTGCAAAAACACTGAGGGCAGCTTCCTGTGTGCCTGCCCCCGTGGCTACCTGCTGGAGGAGAACGGCAGGATCTGCCGAG
Seq A exon
GTGACATCCCTCTTCCCACACCCACGGCCCATGGGGCTCTGTCCCTGTCCTCCTCAGGGGCTCCCCCTCCCGTTGCATGGGGTGAGCTTCTGTCTCCAGGGCGTCTCCCCTGGGAAGCCCCCAGCCCCGGCAGGCCCTACCTTGAGCCCTCCGGGACCTTCTGTGTCACAG
Seq C2 exon
ACCTGGATGAGTGCTCCTCCAGGCAGCACAACTGCCAGTTCTTCTGCGTCAACACCATCGGTGCCTTCACCTGCCGCTGTCCCCCTGGCTTCACCCAGCGCCACCAGGCCTGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGTGCAGCCAGGCC
R:
TGGTGGCGCTGGGTGAAG
Band lengths:
224-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]