RnoINT0059594 @ rn6
Intron Retention
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117578227-117581134:-
Coord C1 exon
chr3:117581012-117581134
Coord A exon
chr3:117578344-117581011
Coord C2 exon
chr3:117578227-117578343
Length
2668 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CATCTTGCACTTTCTTGCAGATC
3' ss Score
10.82
Exon sequences
Seq C1 exon
ATCTAAATGAGTGCAACCAGGCTCCCAAACCCTGCAATTTCATATGCAAAAACACAGAAGGGAGTTACCAGTGTTCCTGCCCCAAGGGCTATATTCTGCAAGAGGATGGAAGGAGCTGCAAAG
Seq A exon
GTAAGCGGTCTTTGGCTTTATCCACTCACCTGCCTCTGGTTATGCCTGGGAAAAATCAGGAGACAAGCTGCAAGACCTGCTTCCCTGGACTTAGTGCCTGGGTAGAGGGTGGGTCCCTGAGGATTACACTGAGGCCAGGGAGGCTGTGTGAGGCTAGGAGTAGCAACCATCCTTGCTTGATACCTCATGAACATCCATGGATGACATCCATGAAGGGTTCATTGGTACCAACTCTCCAAGGTGCTGGTGAGGCTAATTCCCAGTAATTCCCCATCTTTTCCCATTCGCCTCATTTATTCATCTGTTCAAAACCAGTGTGACCTAGGAGGTCTTCATACCATGATCTTAGAGGTGTGTCTGATTAATTAAACTAGTGTTTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATATTTTAAGTTTGCAAAATAAAGCCACCAAGCTTTCTAAGAACTTAACAGAGGGAGTTGCAGAATTGAAAAACATTCAAACTCTGTGCATAAATCTCTCAACTAGAAATTACCTTTTGTAAAATCAGTTCAGAATATATTCAGCCATGAACATCTTACTAGATAAAACCTTCAGATGTTCTCCTATGCAGACCTGGTCCTAGGTCCTAGATGATCCTGTAACTGGGGAAGAAGCCTCCGATCCCAGCATCTACTCATAGTCCTAAGATGTGAGCTTCACGTGGGATCACTGTGAGTTCTGGCAAGTGTAAGGGTTTGGAGCAAGAGATAATTTGTGTGAACAAAGAAACATGTTCAGAAGAAATTTCTCTTCTCTCTGCCATTTGTAAGAAATCAAATTCACATCTTTGTAATCTGCAGTGGTAGGCCACTGTAGATGTTCGCCTCAGTGTGAGCAATGACTTTCCCAAAGATACACATCTGTAGTCACCCCCAACCCCCTCAGTGAACCCTTCCCCACTCTCTGTAACTCTGGATTCAACATTCAACTTGAGCAGAAGGAGACATAGGAGAGAATGACTGGAGTCTCAGGTGAGGGCCTGGTGACCCTCTCCTGACCTCTGCCTCTATGAGGGAACATCTATAGGCCTGACCATGAGGGTTATTTGCAAGTAGCACGAGCTACTCTGATGAAGACAGTGACCAGGCTGTTAGGTCCAGAGTCTTTACTTCACATGCCCTTCTCTCTGTGTATTCTCATAAAGTCCAAGTTGGTCTACGCCTGACATGTGGAAGGGTGCAGGTACATGTTCCACTCACTCTCAGACGAAAACAGAGAGGCTCTGGGAGAGGTGTGGGACCAGTACCTTCCCCTCACTGGAGAAACAGGGTAGGCAGGAAGAAAAGAAATCAGGGTAAGATTCATGCAAGTATGGATATAACACAGTGAAACCCACCCCCATTAATTTGAACAATTCGTATATGTTATTGCTTATAATATAAAAGGAGAAGAGGGGGAGGTAATAGAAGATATTCTTGAGGTTGAGAACACCAAGTTGCTGCTAAAAGGTTCACAGGAGTGGATTGGACAACTGTGAAGGACCACAGCACTGTTTTCTCACCAGCTGCAAGTGAGGGAAGTTGTCCTCTCAGCAATAGAGGACTCAAGAAAGGCTTCCTCTGAGGATGGGCACAGGGAGGTCCTCTCTGGTTAGGACAGGTGCCTTCCCAGGCAGGAAGGCGGCTGGGGAGCTGAGGCAGCTGCTACAAGGCTCACACCACTTGTGCCTCTGTGCAGGGCCTGAGTTCGTGATAAAGTACTCTTGAATTCTCAGGCATTAAAAGCCATCCCTCAAGTCCAGCATACGTGGTAGCTCTTAATATATCTGTAAATGCTTTTGGGGCTTGAAGCGAGTCCAGAAGCTAAGGCTGTGTGTACAGACTCTGTTAAGGTGGGAGACTGTACTGAGATTTAAGAAAAAAAAAAAGAACTTTGCCTCTACCATATAGGAAAAGGTTTTCTGTTTTTGTTTGGTTCATCAAAATCAGCTAGATAGATAGATTGATTGATTTTTGTCTTTGCCGGTTGTTCAATTCTATTTCATTCAAAGAAAAACTGCTAACCAAAGAAGTCAGGCCGATGGCCTCCTTTAGGTTTGTTCTAAACACAGCAGAAAGGAATGAAGGCAGTGGTCCTCAGGCTTCCTTCTCTTTACCCCGACCTTCCTCTACCTTCCATTAATACCTCCTCATGTCAGGGTGACCCCTAACCATAAAATTACTTTCGGCGCTACTTCATAACTATAATGGTGTCATTATGGATCGTAATGTAAACGTCAGTGTTTCCCCATGGTCTTAGGCGACCCCAGGGAAAGGGTTTAGACCCGATGACTTAAGGGAACAGTAGATTTCCGGCCTCGACCTTTCTTTGATATCTTCACTCAGATCTTTTCAATGCTCTGGAAAATGTTCAGAATGAGTTTTTACTTCGTCTTACAATTCGTTTAAGCATTTAGAATATCTTCCAAATACAATTTGTTGACAAACCCCTACATTTCTTTAGCTAAGGGAACTGATAGACCTCAGCTCCCACAGAGCCACTTTCCCTTCCTTTCTCAGCCACCTCTTGCCTTCTTGCCAGCCCTGCTGTGGCTCTACGCTGCCCACGGCCCTTCGAAGCCTAAGATTCTTCCTACCCGAACCTGCTCGGCACAACTTGAATCCCATCTTGCACTTTCTTGCAG
Seq C2 exon
ATCTTGACGAGTGTGCAACCAAGCAGCATAACTGTCAGTTCCTGTGTGTTAACACCATCGGCGGCTTCACATGCAAATGCCCTCCTGGGTTCACCCAGCACCACACTGCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302:ENSRNOT00000056022:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]