GgaINT0027940 @ galGal3
Intron Retention
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11683968-11684857:-
Coord C1 exon
chr10:11684735-11684857
Coord A exon
chr10:11684085-11684734
Coord C2 exon
chr10:11683968-11684084
Length
650 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
AATGTTTGCTTGTTTTTTAGATC
3' ss Score
9.83
Exon sequences
Seq C1 exon
ATCTGAATGAATGTAATGAGTCCCCCAAACCTTGCAATTTCATCTGCAAAAACACAGAAGGGAGCTTCCAGTGCTCATGTCCGAAAGGGTACATCCTTCAAGAAGATGGGAGAAGCTGCAAAG
Seq A exon
GTAACAAACAAGCAATTTATTGCAGAAACTTGATGTTTCATGGGCAAGTACTAATCCAAGAGCATTTAAATAATGTAAATCTTTACAAATGCTGGTTATAATAATTCTAATGGTCTCCAGCTCAAAGATGAACATTGTTTTCAGTGCATTGTCCAGCATCAACAGAGTTTTAACTTACCTCCTCTGCGTTATGCTGAATAAAGGACAACATTGCAGGAGAGAGTTTGAAATGTTCATTATTTTTTCACTTATTTCTATATCTTGTTACTAGAGCTCCAGCTGAAACCACACAAGCTTGAGCAGCGATTCTAAATTTGGCGTTCTTCAATACAATGCCATTTTGCAGTCTGCCACTGCTTATCATATTGATTGACTGCAGCTAGAGCAGGCATTATAATATAATAGAATCTTACAGACAGATGAGAGTGGTGTCTGTAATCCTGCATTAGCACAGACACTGCTATAGCTCTGAAGTCCCATTCATAATGTGAGGGGCTCCATGTTCGAGGAAATGGATGCCAGTGTGGAGATGAGATTTAGATTCAAATACCTTTATCTGATCCATTATTTATTTGCAGTCACTTCTAAGTCCAGCTGAACTGTCAGATCCTCCCAAGAAAACAAATGAAAAATGTTTGCTTGTTTTTTAG
Seq C2 exon
ATCTCGATGAATGTGCAACAAAGCAGCACAACTGTCAGTTCCTTTGTGTCAACACTATTGGGGGTTTTACTTGTAAATGTCCTCCTGGATTCACTCAGCACCATACAGCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960:ENSGALT00000038883:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGAATGTAATGAGTCCCCCA
R:
CAATGCAGGCTGTATGGTGCT
Band lengths:
238-888
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]