BtaINT0061632 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112057391-112062998:-
Coord C1 exon
chr8:112062829-112062998
Coord A exon
chr8:112058041-112062828
Coord C2 exon
chr8:112057391-112058040
Length
4788 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CTTAACTCTCATCCTTGCAGGGT
3' ss Score
10
Exon sequences
Seq C1 exon
ATTTGGCCAATTGGGAGAGAAATTAACTGTAAGTGCTTAAAGACGCTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGCAAATACATTGTCTGTAGTTCGGCACTGGGCCTCTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
Seq A exon
GTAATATTTCCTTGGGCCTTTACTGTTAATAGTCTGTTGCAGTTTATTAATAAAGACAAAACAGTATTTGGGTAAACTAGTTAATAACTTGCTTTGGGGAAATGTTTACTCACATCATCTGTGCTGAAAATCTCAAACAAAAATATTTTACAGGCAGTAATTAAATTAGAAAGAGGTATATGTTAGAACGTAGAGACTCTAGCTTCTAATTCCTCTTATGTGCTGTGTGCTCAGTCACATCTGACTCTTTGAGACCCATGGACCGTACGTAGCCCACCAGGCTCCTCTGTCCATGGAATTCTCCAGGCAGGAATACTGAAGTGGGTTGTCATTTCCTCCTCCAAGGGATCTTCCCCACCCAAGGATCAAACCCGTGTCTCTTGAGTCTTCTGCATTGGCAGGTGGATTCTTTGCCACTGCACCACCAGACAAGCCCAATCCCACTTCTTAACTCTGAGTTAACTTCCCCTTTCACAATGTCTGGATTCTCCTGCCAGTTTTTCTGGAAAATGGAAGAGTTTGGATGAAAAGATCTTTCAGATTTCCTCTAGTTGTAATATTTTAAGTTCTACTTCCTGGTCATTTGAAACTGTGCATTAAGGAATCAAGTGACGTTCTTTTGACTAGTAGAAAGACAGAGGTACTTAGAGAATGTTACAGCCTGCGGGCTTTCTCTTCACCGAAATAGAGGCCTGTGGACAGTTTTGTGATTCACTGCATAGACCCCTCTGGAGACGGCAGTGTATGGTAGCATATTGGAGGCTGGGGGAAGCCAGTGCTGTGTGGTGATGAAGAGAACTGACTTTGGTGATAAATAAACCTTGCTTTAAGACCTAGTTCTGTAAGTTTCTTAACCTCTCTGTGCCTCAGTTGTCTCACCTGTAGAGATTAAATTAATTGCCTCTAATGAGGATCAGTCCTAAATGAAATCAGTCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTCAAGCTCCAGTACTTTGGCAACACGATAGAAAGAGCTGACTCATTTGAAAAGACCCTGCTGCTGGGAAAGATTGAAGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATCACTGACTCAATGGACATGAGTTTGAGCAAGCTCCGGGAGTTGATGATGGACAGGGAGGCCTGGCGTGCTGCAGTTCATGGGGTCGCAAAGAGTTGGACACAACTGAGCAACTGAACTGAATGGGGATCTAGCTCAGGACCTGACAGTCTGTGTTATTAATACTTCTGAGAAGTCCTATGTAAAGAAACCTGTTTTAATTTGTTTAACCTACTGTACCTCCCACACATTGGCATGGTGCCCTTGCTTGGAGGCGTGCCTATTGACAGCTCACAGAATTAGTGTTCCATATCGTGCTTCCCTGGTGGCTCAGATGGTAAAGCGTCTGCCTGCAATGCGGGAGACCCGAGTTTGATTCCTGAGTCTGGAAGATCCCCTGGAAAAGGAAATGGCAATCCACTCCAGCACTCTTGCCTGGAAAATCCCATGGACAAAGGAGCCTGATAGGCTGTAGTACATGGGGTTGCAAAGAGTCGGACACGACTGAGCGACTTCACTCACTCACTCACTCAGTGTGCTTCAGAAAGGACTGCCTGGAGACAAAAATTGAACACTTTATCTTCATTGTTTTTACGTGTGACTGTTTAGAGGTCAACTCGAATGGGATCTGATCCTGCCGGCCAGCAGCTGACGGCCCATCTTTGGTCGTAAAGTTACAGCCTCATCACTCTCTTCCTGGAGTCAGACATACACTGCTACTTTTTTTTTTTTTTCTAACCAGTTAGATTTCCAAGCTATCAGAATAATTTCTAGAAATAATTGATAATTGCACCCTGACGGAACAGATCCTAGAAAACATTGGTCCAAGCTCTTCATTTTACCGGTTGGGGAACTGAAGCTGAGAGAGGTTAGGGGCCTGGCCGAACATCCCACAACTCCCCCTAGCCCAGCACCCACCCCACCTCCATCCGTGCATCCGTCCATGGCTGGATCATCCAGTAGACATATGCCCAAGGTAGCAGCAAGCCAGAGAGAAGGAACTTTTGAAAGAACTTGATTCTTTGCAAAGTAAGAAATTCAAGTGCAGTTGGCCATGGGTTTTGCACCCACAGATTCAACCAACTGAGGATGGAAAATTTTTTTAATTTTCAAAAAGTTCCAAAGAGCAAAGTTTTGAATTTGCCACGCATCAGCAACTATTTTCATAGTATTTACATTGTATTAGGTACAAGCAATCTCGAGGTGAATTGAAATACATGGGCGGATGTGTAGGTTATATGCAGATACTGCACCTTTCTGCACAAAGGACTTGAGCCCCCATGCATTTGGTATCTGAGAGGGCTCCACAGCCAGGTCCCCCCAGAGACGACTAGTCACCATGGAAGTCAGGTCTTTGGTAGTTTACTAATATTTTTGTTTGAATTAAAGTTTGGAAGAGAGGGGTGCTGAGGCAGGGTGGAAGATAGGTGTTGTAATCTTTCTCATGCTTGGAGTCTATAAAGGTTTCATTGAATCCTGCACCTGCTTTTCTCCTGTAAGAATGGCAGGTGGAGTCCAGATTCCAGACGAAAGTTCTGTTAGTTTTTGCTATTTGGATATACAAACAGGAACTTTTGAAAGAACTTGATTCTTTGCAAAGTAAGAAATTCAAGTACAGTTGGCCATGGGTTTTGCACCCACAGATTCAACCGAGGATGGAAAATTTTTTTTAATTTTCAGAAAGTTCCAAAAAGCAATAAACAGCTGACTACATGCAGATGTTTTAATGGTTGGGAGAAGAGCAACATGGAATGGGGTACTCTGAGACTCTGCCTAGTTTGAGAAGTAAAGGAAAGCTTCTTTGAGGAGGAGGGTCAGGCCAAGCCGTTAAGGGTGAGGAGATGCATCTAGCTAAGTGCTAGGGGTGTGAGTGTGCCGTGAGGATCACGGTAGACCAAGCGTGCAGCCTGCTGAAAGGCCCAGGACCCACCGGAGCCCGGTGCACCTGCGTGACTGAAAGGCCAGCGTGGCAGATGGGAGGACAGTGGGAGCCAGGAAAGGGGTTGAAAGTTCGAATCAGGTGGTAATAGGTGTAAATTTAAGTGTGAGGTTAAATGATTGACAGTGTCCAAAAGCAGAGTGGGGAGACCAGCTGAAAACCCTGGGCGGTAGTGCAGGAACCGGTGATGTCCTAGATCAGAGCTGTGGCAGTTGAGGTCGCAGTGAATAACTCAGAGGAAAATTTAGGAGGTAAAACCAGTAGACCCTGGTGGTTGGATCTGTGGGTTTAGAGTTGGATGACTGCCGCGTTTCCTGTCTTGAGTGTCTGGGTGAAGGAGCAAGCAAGGACACAAAGAGAAGCCGGTTTGGGCCTGAGGAGTGTGAGGAACAGGGCTTTGTCTTCATGCTGAGTCCCCTCCCTCCCTGGTCCCAGACTGGAGTCCGATTCTGTGTACGCTCTTTCCCTTCGACCTCCCTGCTGGAGCCCGTCGTGCGGGGCCTCTCATGGATCCTTCACTGTCGAAAGGTGATGACTGTGGTGATTCTCTCCGTTTCCTCTGGTTAACGTCTGCGCGCACACTCGTTGCGGGTGTCCTTGTTTAGATGTAGAGCAGACGGGATGTCACCTGGCCTCAGGCGGACGGGCGCAGCAGTTTGCACAGCTCTGTCTTGTCGCTCTTTTCCCAGCGCTTCTGAAGAGAACGCTGGCGTGTCACCTTACTGAGCGTGCAGAGACTGAGAGCTGCTGTTCTCATTCGTGTGCCTCTTCAGCACGGTCTCTCCCCGCTTGTGCCTTTGTCATCAGTGTTTTATGAACTGCCAGCCTGAGAAGGTTAAAGCTGTCCTCCCTGCTCTCCCAGTTTTCTCTAACTTACTACGAATCTATTATTATTAAACGTTTCTGAATTATTTGGGAAACTTTATATTTTCAGCCTATGACTGTTTTGAGCGGAACCTGTGTTTGCTGCCTGCAGAGCAGAGCAGCACCAAATCACTTGATTTTCCGCCTTCTTTCTGGGCTTGGGGGGTTCCCCTCGGCCAGTGCAGTCTGCCCTCCACATCTGTGTGCTCTGCATCCACGGCCGTGGAGGGCTAGCCGTACTGTGCCGTTCTATCCAAGGGACGCGAGCATCCTCAGATTCTGATATCTGAGGGGTTCAGGAAGCAAGGGATGGGGATGATGTATAGCAGTTTTTACCCAATGGTAAGAATGGAATGTTAGACTCTCCTTCTGACTAGTAACTAGCTAGTTGTAAAGCCTTAGCCAGAGTATTTACCCTGGCTGTACTTCAGTTTTCACATCTTAGAAATGAAAATATTAAATGAGATAATCTGAAAGATCCTTTCCAGCTTAGATGGGCATTTTATGCTTTTATAAATGTTTGTTTCCTTATATGCCTGTGTTATGTTATTATGAAGGGTTTTTTTCCCACACCTTTTTTCCAAAGGGTTTTTTCCCACACCTTTTTTCCAAAGTAGGGTGAGTTTTATGTCTTCATATTTTCCTTTTTATAAGAAAGTTCATTTAGTTTTAAATTTGCTTGAATTTTGTATTGTTTTTTTCTTTGACTGCACTGCTCACAGGATGGAGGATCTCACTTCCCCGACTGAGTATCGAACCTGCGCCCCCTGCAGTGGCATCGCGGAGCCCTCACCACTGGACCACCAGGAGATTCCCTGTATTGGTCTTAAATGTCTCCAGAAAAGATTACAGCAGCATAACAGATGCACAGTGGCCTTCATGCCTGGTTCACGTCTCTTAACTCTCATCCTTGCAG
Seq C2 exon
GGTCATCAAGACTCCTGAGATAGCAAACCTGGCCTTGCTTGGCTTTGGAGACATCTTTGCCCTGCTGTTTGACAACCGCTACCTGTATATCCTGGACTTGCGGACAGAGAGCCTGATTAGCCGCTGGCCTCTCCCCGAGTACAGGAAATCCAAGAGGGGCTCCAGCTTCCTGGCAGGCGAAGCATCCTGGCTGAACGGACTGGATGGGCACAACGACACGGGCTTGGTCTTTGCCACCAGCATGCCCGACCACAGCATCCACCTGGTGTTGTGGAAGGAGCACGGCTGACACCGTGAACCGCTCCGCCCGCTGACTTCGGGTGCCGGGGCTGCGGGTTTGGGGTGCAGCCTCTGTGGTAGCCGACTGCATGAACCAAAGTTCTCACCTCATGGTATCATCGCGCAGTGCACAATCATGTATCTGTTTGCGGGGGCCAGGGCTCGGGGCGGGGGCTCGTTCTGTTGACACACAGCACAGCAGGCTGGCGGGGTGCACCGCTGGTCCATTTGTCCTTAGTTTGTGGGTCAGTGTGAGAGGCTGCATCTGGGGTTCATCTTTCTTGAATATTGATTTTGAGTAAAGAAATATAAGTGGCTCATTAATCTGCTAATTGGTTGCCTATAAAAACACAGTCTGTGATTAAAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712:ENSBTAT00000000956:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]