MmuINT1010198 @ mm10
Intron Retention
Gene
ENSMUSG00000035949 | Fbxw2
Description
F-box and WD-40 domain protein 2 [Source:MGI Symbol;Acc:MGI:1353435]
Coordinates
chr2:34805178-34807447:-
Coord C1 exon
chr2:34807278-34807447
Coord A exon
chr2:34806000-34807277
Coord C2 exon
chr2:34805178-34805999
Length
1278 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTGAACTCTCCTCCTTATAGGGT
3' ss Score
9.91
Exon sequences
Seq C1 exon
ATTTGGCCAATTGGGAGAGAAATCAACTGTAAGTGCTTGAAGACACTGTCTGTCTCTGAGGATAGAAGTATCTGCCTGCAGCCAAGACTTCATTTTGATGGAAAATACATTGTCTGTAGTTCAGCCCTGGGTCTGTACCAGTGGGACTTTGCCAGTTATGATATTCTCAG
Seq A exon
GTAATGTTTCCTTAGGCCAGCATGTGCTCTGTGTTAATTAGAAGTTTTATGCCCAACACATGGTAAATGATAGGTTAAAAAAATGGCCCTCCCTTCCTAATGTCAAATTCAAATCTGGGTGGTGGGGTGGTGGTGGTGATGGTAACTTTTCCTTTGAACCTAGTTCTGTTTTCTAGAAGTTGTAATGGGAGGCCTTCTCTATCCACACTCTGCTGTTTGACAGTAATAATGTGTTGTTTCCCTTCCTGACATTCTGTTTTGCTTACTCTAGCTCAGAGGTTCTCAATCTTCCTCATTTTGTAGTGACACCAGCCATAGAATTATTTCATTGCTACTTCATAACTATAACTTTTGCTACTGTTATGAATCGCAAACATCTGTATTTTCCAGTGGTCTTAGACCCCTGTGAAAGGGTTGTTCTACTCAAACGCTGCTCTAGCTATTATCCTTGGCTGTTCTTGCTTCACCGAGTTTACCAGCCACCCCCGTTCTAGTTGGCCTCTTAGACATAAGCTGGTCTAAGATATTGCTGGTGTCCTTGTTAACATCTAAACTAACCTCCCAACCAAAGGAGCCTAAGGAGGTTGCCGTGGGAAAGTGTAGACTCCAGACAACATCTGACTTGTCCTGTCAATCTGGTGCTTGACACAGGGAAGCTGCTTTGATTTTTGTTTTTCTTTTTTCATTGGTGCATATATTGCATTAGGTCTCCCATTTTGTGTCTTGGTCATTGGTATTTGGGAACTGCCACCCTATGAAAGCTGTGACTGATTTTCCAACTTAGCCAGTTGTTTCTAAAACCTATGAATCCATTGTTAATAGATGCTTATAAATTCCCAGCAGTTTTTACTATCTCTAGCTAGTAGTATTTTTAGAGAAAAAGCCATTTAGACTTGTCCTGAGGATGAATCAGGCTTCATTCTGGTTTTCACCCCTAACCAACAGATTCTGTGAACTCCTGCCTGGGTGTCAGTTTCTAAGTCTTAAGAGTGCAAATGATTAAATAAAGTGGTTTTTATAATTTGAATTATAAGTTAACCTGTAGAATCCTTTCAAGCCTGGATGGATATTTTGTGTTTATCAAACATAACACCTTGCCTCTGCTTGTCTGTCAGAGGGCAGGTTTCTTCTTCCCTGCTTTTTGTAAGTAGGCTAACTTTTATCCTCATGGTATTCTTTTAATCAAAAATTCTTATTAGCTCTAAATTTGCTTGGGAGTTTTAAGTGTCTCCAGCCATGTTTCCTTTGCCTCATGACCCTGAACTCTCCTCCTTATAG
Seq C2 exon
GGTCATCAAGACACCTGAGGTAGCAAACTTGGCCTTGCTTGGCTTTGGAGATGTCTTCGCCCTGCTGTTTGACAACCACTACCTATATATCATGGACTTGAGGACAGAGAGCCTAATTAGCCGCTGGCCTCTGCCAGAGTACAGGAAATCAAAGAGAGGCTCCAGCTTCCTGGCAGGCGAAGCGTCCTGGTTGAATGGATTGGATGGGCACAATGACACGGGCTTAGTCTTTGCCACCAGCATGCCTGACCACAGTATTCACCTGGTGTTATGGAAGGAGCATTGCTGACACCAGGAGCTACCACCGCTGACTGACTTTGGGTGCCAGGGCTGCGGGTTTTGGGTGCAATGTCTATGGCAGCCAACTGCATGAACCAAAGTTCTCACCTAAAGGTATCATCACGCAGTGCACAATCATTTATCTGTTTGCCAGGGCTGGGGCGGGGAGGGCTTGTTTACTGACATACACCGCAGCATGCTAATGGGATACACCATTGACTTCATTTGTACTTAGTTATGTTGGTCAGTGTAAGAGAGGTTGCATTTTTGGATTTATCTTTCTGAGTGGAATATTGAGTAAAGAAAGTTAAATGATTCACTAATCTGCTAATTGGTTGCCCATAAAATCACATGGAGTCTGTTATTAAAGTTTTTTTCCAATAGCCTTTGTTCTTTGAAATTGAAGCAAAGGTGCTATGTTATAGCAACTTTTCTCACATGGGGTTTAGATTTTAAAAGAGCCATTGTTAAAACATCTTTGAATTCTGTGACATTCATTAACTTTCTACTAGATCCCTTAAATCTACAAATGTCTTCCAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035949:ENSMUST00000028220:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTAGTTCAGCCCTGGGTC
R:
CTGGTGTCAGCAATGCTCCTT
Band lengths:
353-1631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types