BtaINT0061723 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49748177-49750563:-
Coord C1 exon
chr18:49749971-49750563
Coord A exon
chr18:49748772-49749970
Coord C2 exon
chr18:49748177-49748771
Length
1199 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
CGGCCTGTCCTGCCTCCCAGGTG
3' ss Score
10.61
Exon sequences
Seq C1 exon
CGCTGAGCTGCCCATCCCACAGTCACTACGAGGAGTGTTCCTATGGCTGCCCGCTGTCCTGCGGAGACCTCCCGGTGTCCGGGGGCTGCGGCTTCGAATGCAAAGAGGGCTGCGTGTGTGACGAGGGCTTCGTGCTCAACGGTGAGTCCTGCGTGCCGCTGGCCTCCTGCGGCTGCGTGTACCAGGGCTCCTACTACCCGCCCGAACAGACCTTCTACCCGGGACCCGAGTGCGATTCCCTTTGCTACTGCGAGGAGGGCGGGCTGGTGTCCTGTGTGCCGTCCAGCTGTGGCCCTCACGAGGCCTGCCAGCCGTCCAATGGCGTCCTGGGCTGCGTGGCTGTGGGCTCTACCACCTGCCAGGCATCCGGAGACCCCCATTACACCACCTTCGACGGCCAACGCTTCGACTTCATGGGTACCTGCGTGTACGTCCTGGCTCAGACCTGTGGGACTCGGCCTGGCCTGCCCCAGTTTGCTGTCCTGCAGGAGAATGTGGCCTGGGGCAACGGGAAAGTCAGTGTGACCAAGGCGATCACCGTGCAGGTGGCCAACTTCACCCTGCGGCTGGAGCAGAATCAGTGGAAAGTCACG
Seq A exon
GTGAGAACAGCCCAGAACGTGAAGGGGAGGGGTCTTCGGTAGAGGGAGGTCTGTGGGTGGGGAGTGCACAGCTCTCAGCTGAGGGGCGGGGGGCACAGAGCTCTGAGTAGATGTGGGGGGCATGGGGTCCCCCAGGAGAGGAGGTGCCAGTCAGAGCCTACAGTGGGGAACCAAGGAGGGCGGAGACCTTGGGGACCTGGGCCTTCTCCTATGTGGCTCAGTCTCCCCTCTCCTTGCCCTTTTTCTTTTTTTAAATTTGTTTATTTATAACCGTGCTGAGTCTTGGTCGCTGTCCACGGTCTTTCTAGTTGCGGCGAGTGGGAGCCACTCTCCCTTGTGGTGCTCGGGCTTCTCATTGCAGTGGCTTCTCTTGTTTTAGAGCACAGGCTCAGTAGTTGTAGCACACAGGCTTGGGATCTTCTTGGACCAGGGATTGAACCCGAGTCCCATGCATTGGGAGGCGGATTCTTTATCACTGGACCACTGTGGAAGCCCTCCCTGGCCCTTGATTATCCCCTCCAGACCCCCCCCAACCCCGTCCTCCCTTCCACTCCACCCTCCGCTCCACCTGCCCCTCCCTCCTGGTCCCTGCTGTCCTAAGAGCATTACTCCATTGAGACCTATATTCATTTCCTGAGACTGCCGTAACAACTCACCACCACCTTGGTGGCTTAAAACAACAGAAATTTATTCTCTCACAGCTGTGGAGGCCAGAAGTCCAAAATCAAAGTGTGGGCAAGAGACTCACCCGCTCCAGGGGTTCTGGGGGAGAATGCTCCTCCGCCTCACGCCGCTTCTGGGGCTTCCAGGTGTTCCTGGCTTGTGCCCCCATTGCTCCAGCCCGTCTTCATTTTTCACACAGCCTTCTCCTCTGGGTCTCCCTGTACCTTCTCCTCTTCCTGCTCTTTTAGGGACATTTGTCATTGGATGTAGGGTTCACCCTAATCCAGGATGATCCCATCTCAAGATCTCTACCCTAATTACCTCTCCAAATATGGTCATATTCTGAGGTTCTTGGCGGACTTATCTTTGGGGAGCCACTGATCGACCCACTATGAACCCTATTATTATGCCCATTTTACACATATGGAAACTAAGACCCAGAGAGGTGAGATCCCATGGATCTTCAGTGTCAGGCAGGGGCCTGATCTAGGATCTCGACGCGTACCCTCTGAAGCCCGGCCTGTCCTGCCTCCCAG
Seq C2 exon
GTGAACGGCGTGGACAGGAGGCTGCCCGTGCTGCTGGACGAGGGCCGGATCCACGTCTTCCAACACGGCTCAGACGTCGTGATCGAGACTGACTTCGGCCTGCGTGTGGCCTACGACCTCGTGTACAACGTGCGGGTCACTGTCCCAGGCAACTACTACCAACAGCTGTGTGGCCTGTGTGGGAACTACAACGGCAACCCCAAGGACGACTTCCAGAAGCCGGATGGCTCACAGGCGGGCAGCGCCAATGAGTTTGGCAACTCCTGGGAGGAGGCGGTGCCCGACTCACCCTGCCTGCCGCCCCCCACCTGCCAGCCGGGTGACAAGGACTGTGACACGGAGCTGGAGTGTAAACCCGAGCTGCAGAACAAATACGAGCAGCAGGAGTTCTGCGGGCTCCTCACCAGCCCCACAGGGCCCCTGGCCGCCTGCCACAAGCTCCTGGACCCCCAGGGCCCCTTGCAAGACTGTGTCTTTGACCTCTGCGTGGGCGGTGGCAACGAAAGCATTCTCTGCAGCAACATCCACGCCTATGTGAGTGCCTGCCAGGCAGCTGGAGGCCACGTGGAACCCTGGAGGACCGAGTCTTTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261:ENSBTAT00000006924:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
A:
NA
C2:
PF0009420=VWD=PD(48.7=38.2),PF087426=C8=WD(100=38.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGCTTCGACTTCATGGGT
R:
TGGTAGTAGTTGCCTGGGACA
Band lengths:
356-1555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development