RnoINT0060185 @ rn6
Intron Retention
Gene
ENSRNOG00000019129 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:RGD Symbol;Acc:2313189]
Coordinates
chr1:85023530-85027481:+
Coord C1 exon
chr1:85023530-85024122
Coord A exon
chr1:85024123-85026898
Coord C2 exon
chr1:85026899-85027481
Length
2776 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TAGCATCCCCCTCCTCCCAGGTG
3' ss Score
8.96
Exon sequences
Seq C1 exon
CACTCACCTGCCCACCTAACAGCCACTATGAGCTATGCTCCTATGGATGCCCGCTGTCCTGTGGAGACCTGCCAGTGCCTGGAGGCTGTGGCTCAGAGTGCCGGGAGAGCTGCGTCTGTGACGAGGGCTTTGCCCTCAGTGGTGAGTCTTGTGTGCCTCTGGCCTCCTGCGGCTGTGTATACCAGGGCGCCTACCACTCGCCGGGAGAAACCTTCTATCCTGGGCCTGGATGCGAGTCTCTTTGCCACTGCGAGGAAGGTGGCCTGGTTTCCTGCGAGCCCTCATCCTGCGGCCCACATGAGGCCTGCCAACCGTCCAATGGAGTCCTGGGGTGTGTGGCCGTGGGCACTACCACCTGCCAGGCATCAGGAGATCCTCATTACATCACCTTTGACGGCCGCCGCTTTGACTTCATGGGCACCTGTGTGTACGTGCTAGCGCAAACCTGTGGGACCCGGCCTGGACTACACCAGTTCACTGTCCTGCAGGAGAATGAGCCCTGGGGTAATGGGAAAGTCAGTGTGACCAAGGTGATCACGGTCCTGGTAGCCAACTACACCCTGCGACTGGAGCAGAATCAGTGGAAGGTCAAG
Seq A exon
GTGAGAGCAGAGGCTCCCTACGGAGAGGGCCACGTGTACGATGCCCGGAGAGCATGCAGATCCCCTGGGGGACATGTGAAATGGGGGTCCAATTAGAGGACATATTGGGAGAAAGCCCAGAGGGAGGAGGCCAGGAACTTCCTAACGTGGCTGACTCCTCTGTCCCACACACTGATTATCCCCACTGAAATTCTCTGTCCGCCTCTCTTCTTGTAGTCCATCTTCCTTTGCCCCACATAAGGTCTGCCCAGGCACCTCCCTGGCCTCACCATAGACAGGATGTGGTATAATCACACAGAGGAAAGGTCAGAGGGGGAAAAGGTTCAAAGAGGGCAATCTGTGATCCCTTTATCCCCTTAACTATAGCAACGACAATAAGGCAGCTACAGGTTTTAAATACTGCGCCTAGGCTGCTGGCACAGACCCATAGTCCCTTTAACCTTGTGGAGTTGGGCTGCTTTCTTTCTTTCTTTCTTTCTTTTTTAAACAGGAAGTGTTCTCATCACTGTCCTGAGGTCCCTGGGAAAATTCGGTATTGTGTTGTTGTTGTTGTTGTTGTTGTTGAAGTGACCTGGGAGAACTGCTTCAGGGAGGAAATACTTTTGTTGAGGGTCTTAGTCTATGTGTTCTTGGGAAGAACATAATGGCTGTGGGGACATGTGATAGAGGAGAGTTGCTTACAGAGAAGGGAGAAATGAAAGGTCCAGGTGCAAGATACCCGTGGTCCTACCTCCAATGGCCTGCATCCTCCAGCTTCGTCTCGCCTCCTAGAGTTTCCAGAACCTTCCAAAATAGTGCCTCTAGCTGGGAACCAAGCAGTGAAAATAGGACCCTTTGTGGGATCATTCATGCAGCAGCGGGATTTAAGCCCAGACCATTCCACCTGGTGCATGCTTTTCTGAGCAGGAAGACTGAGTCTCACAGGAGACTGGCATTTGAGATGCACTGGGAATTTCCCCACTTACATGCAGCACCCAGCCATTGTGCTGGGAGCAGTAGGAACAAGAGCTGTCCCACGCCAGACACAGGTTGCAGGGGCAGCATCTTCCCTAAGGAGCCCCAAGCTCTGAGGTTAGCAGCTGACACATGAGCAGCTCCAGTCAGAGGGAGCGCTCTGTTCCTGTCACCAATCCCCAGCTTCCCTGTGGCTGTCCCTCACTGCAGAGGCAGAAACTGAGCCCAGAGGGTTAGGTGACATGCCCTTCACTACCAGCCTGGGGAGGAATGGCTGTTGGTGTCTTTTGGACACTCCAGACATGCCTAGAGCATGCCTCTCCCTGCCTCCTCCCAGTCTCTTTGCACCTATGAAAAGCCGGTGAGTGGGGTATGTGTGATGAGGAAGGGCACAGATGTGGTGAGCTCAGGGGTGCACCAGGCAGAGCCCTCGGAATCTGCAGAGGAGGAATGGAGCCTGGCTTTTCATCCAGCCACACTTAACAGCAGCAACTCTGAGTGCCCCAGACTGTCCAGATGGACTTACAAACACAGCCCCAAGCCACGGGCATGTCTACATCCCCAGCCTTTGAAGGTGTCGGGTATCAGATTCCTTAAATAACACTCTGGAGACAAGTCCCCCATCCCTCCTAGATAGTCAGGAAGCGGAAGCTGCAGGTGAGTCTCCTGTCCAAGGGCGCAGAGGGCTAACCAGAGGTCTGTACTATAAAGCCCAGCCACGGGCTCCAAGCTCAGTCCCTGCATGTCACCTTGTCAACTAAGGAGCCCCTCATTCAGACTGCTGAGGTGATTACTCAGCTGAGACATAGAAAGGTTTCCTGGTGGCTGCTGTGACAAAATGTTACAAGCTTGCTGTCCTAAAACAACAGTTTTAATTCTCACGGCTTTGATTGCCACAAGTCCAAAATCAAGGTTGCAACAAGGCCACACCCTGTCCAAAGACTGAAGAGGAGAAACCTTCTTGCCCTCTCAGCTTTTGGTGTCTCCAATGGTCCCTTGGCTTCTAGTGCCAGCACTCGGGGTCCTTGATCTTCCCTCCTCTCATTCTCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCCATCCTCCCCTCTCACCCTCGGTCCCCACCATCACTTCTCCCTCTCCCCCTCTCCTCGTCCTCTCCTCTCACTCTAACTCTCTCTCCCGTCTCCTCTCAACTTCACGTCGCTGCTCTCTTCTCCTCTCCCTCTCCTTCTCACCTCAAGGCTCTTGTCCTTTGATTTGAGTCCAGGCTGAATACAGGATTATCTCATTTATCTCATTTCAAGATAATAGCTGTAATTATACCTGTTCTGACCTTTCCTCAAAAATACTTTCTGAAGTTCTGGGTAGACTTATCTTTTTATTATTTTTTGTTTCTTATTTTATGCATGTCTCTGTGTGTGCACATGTCCATGTGAGTGACCACAGAGGACAGAGAGGGGCATCAGGTCCCTTGGAGTTGGAGTTACAGGAGTTTGTGAGCAGCTGGGTGTGGGTGCTGGGTCTGAACTCTGGTCCTCTGATACAGCAGTGAGATTCTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCAGCAGTGAGATTCTTAACGGCTGACTCCCCTCTCCAGCTTCTGGCTGGGAGATTTACCATTTGGAAGCAGCCATTAAACATAAGACACTGCTGTTATGCATATTTTACAAATTCAGGAGCTAAGGCCCACAGAAATGAGGTCACCCAGGATTTCAGAATCAGGAAGGACATTAGGGACAGGCTGACTCAAAGCATGCCCTCTGAAGCTTAGCATCCCCCTCCTCCCAG
Seq C2 exon
GTGAACGGCGTGGACATGAAGCTGCCAGTGGTGTTGGATGGAGGGAAGATCCGCGTCTCCCAGCACGGGTCTGATGCTGTGATCGAAACCGATTTTGGCCTGCGTGTGGCCTACGATCTCGTGTACTCTGTGCGGGTCACCATCCCAGGCAACTACTACCAGCAGATGTGTGGCCTGTGTGGGGACTACAACGGGGACCCCAAGGATGATTTCCAGAAGCCCGATGGCTCCCAGGCAACCAACCCCAGTGACTTTGGTAACTCCTGGGAGGAAGCCGTGCCCGACTCCCCCTGCGCACCAGTGCCTCCCTGCACAGGAGACGACTGTAACCCTGCGTGCAGCCCTGAGCTGGAGAACAAATATAGTGGGGAGAAGTTCTGTGGGCTGCTCACCAACCCCACAGGGCCCCTGGCTGCCTGCCACAAGCTGCTGGACCCCCAGGGTCCCTTGAAAGACTGCGTCTTTGATCTCTGCCTGGGTGGCGGGAACCAGAGTATTCTCTGCAACAACATCCATGCCTACGTGAGCGCCTGCCAGGAGGCTGGGGGGCAAGTGGAGCCATGGAGGACTGAGACCTTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019129:ENSRNOT00000057122:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
A:
NA
C2:
PF0009420=VWD=PD(48.7=39.0),PF087426=C8=WD(100=39.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]