DreINT0010760 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36544073-36546677:-
Coord C1 exon
chr15:36546339-36546677
Coord A exon
chr15:36544659-36546338
Coord C2 exon
chr15:36544073-36544658
Length
1680 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ATACACCAATATTCCCACAGGTC
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTGGTCTGTAATAAGATATCCTGTGGCCCCTTTGAGAAGTGCGAGTTGGTGGATGGTGTTCAAAAATGCCAGCCAATTGGGAAAGCTGTTTGTCAAGCTTCTGGAGACCCACACTACGTGACGTTTGACGGACGGCTCTTTGATTTCCAGGGCACCTGTAGATATATACTGGCCCAGTCCTGTGGTGTGGAGTGGACCAACCTCACTTATTTCTCCATTCAGGTGGAGAATGAGCGATGGACTCCCAATAGAGTGTACAAAGTCTCCGTTACCAAGCAAGTGGCTGTAAGTCTGTACGGCAGCACCTATGTCTTAAGACAAAATCAGCCTCAGATCTTG
Seq A exon
GTAAGTGAAGGTTTATCTGCTTTTGTTCTTGATTGTGGTCTATAAAGCTCCCATAATACATAATGATAAGCAATTATGAGTTCCTATAATATTTGAAAACATTGTCTTCTTATTTGTTTCTTGGAATCTCAAAAGTGGAAATTGACAAACAACATATATCATTTGTGCATCCATATAGATTCAGTAAATAGGGAAACTTGGAGATGATTGCTTTACCACTGTATTGAAGGGACCCAAAATTAAAAATTTTGTCATTATTTACTCATCCTCCACTTGTTCCAAACCTATTTGAGTTGGTAAAAAAGCAGTCATTGACATCTAATGAAACAAAAACACTATGGATGGCTGTTTTCCTTTTCAGCATCCTTCAGTATGTTTCTTTCACTCTTCAACAGAAGAGAGAATTTCATATTTTAGAATCACTTGCGGTTAAGTACTACAATGATAAAATATCATGCTAAGTAAGGCAATATTCAAGGCATCAATCACATTTGCAATTTAATTTTGCTTAATCAACCAGCCCTACTATAAAAACAATGTAAGTCAGCACCAGTTTGAGCACAGCCCCTGGTGTGAACTTAACACATGTCAGTTTCACTAATAATACCTAGGTTATAGCATTTACATTTATGATGTAAACACCTGCACTGCCAAAAATGGATTTCTTGTTTTAAGTTTTTGTCTTTTGTTTGTTTTTTTGTTTGTCCAAATCTCATATCACAACATTCATATCTCAAAATTATTTTAAGTTTTCCCTTAAAACAAGCTAAATAATTTACCAGTGGGTAAAGTAAAATATCCAGTGTATATATTTAGTAAATATTTCAAACCAAAAACTATTTTGCAATATCAAGAGAAGCATTTTTGCAAATACAGGCTCATTGTGAAAATGTACCCCTGTATACATTTTTGGAGAGCGTGAATTATGTAGCCAGAGATACGTATGGCTGCATTTCGTCTTTAACACAAACGCTAGTGGTCTACCGGCTGACCACTTACTTCAGTGTGGATGGCTTTTCCGTTAATACTAGTTTGCCCAGTGGCTCTCTGCGCACGTTGGCGGACTTGAGACAGAGTGGAGCTGACCGCAACGATTCCAGAAAGCAGGTAAAACAAAAGGCTAAAAATAAAATAAACTAGTAAATAACAGGATGAGAATGTGGTAAGAATTGAAAACATAGTAAAAAAAATATCTGCTTTCTTTTTCTGTGTTGCTTTTAAAAACATTGACGGTTGGGTTTAGGGAAGGCGGTGGGTGGGGGGATAAATCGGTCGGTCGGTCGGTCAGTCGGTCAGTCAGTCAGTCAGTCAGTTTACAGTGGCCTCTGGTTGGTCGGTCGGTCAGTCAATCAATCAATCAATCAATCAATCAGTCAGTCAGTCAATCAGTCAGTCAATCAGTCAGTCAATCAGTCAGTCAGTCAGTCAGTCAGTCGACAGTGGCCTCTTGCCTTACGCAAGAACAGGATGACACTCGCAAGAGAAATTTTAGATCTAAGAAAGTGTACACAGCGGCTTCTGATGGGTTGGCAAAAATTTCGTGCTGTCGAGAAATGTATGCAGGGGTACATATCAATAATGAGCCTGGTTTGATTTCTGCAGTTTGGAAATGCATTATCACAAAGTGAAAAGGGTCCATTGCTTTCAATGTCTTTTAATAATACACCAATATTCCCACAG
Seq C2 exon
GTCAATGGGGTTTTAACAAACCTACCGTACAGTTCAAACAGTTTAAATGGCTCACTGGTGCGGGCCTATAAGGACGGTGTGAACTACATCATCGAGACTGGCTTTGGCCTCAAAGTGACCTATGATCTGGTCTACTACGTCACTGTTACCATCCCTGGAAACTATCGTAACAAGACCTGTGGACTCTGCGGCGTCTTTGATGGAAATCCATCCAATGACTTCCGTCTCCCAGATGGCAATATTACAAACGATCCTACTATATTCGGGAGAGCCTGGAAAGTGGACGTCCCTGGATCTGTGTGTGAGGAAGACGGTTGTGTAACAGGCACATGTCTGAACTGTGATCCCCAGCTGAAAGCCATCTATGAAAAGCCTCCATATTGTGGCGTTCTGATTGATCCCAATGGGCCGTTTTCTGCCTGTCATGTTGTGCTGAACCCTGCAGCTTATCTGAAGGACTGCGTGTTTGATACGTGTGTGTCTGGGGGCAGCAGCAAGGTGGTTTGTGACAGTGTGGCAAGATATGCTATTAACTGCCACACAGCCGGAGTCAATATACAAAATTGGAGGACGGATTCTTTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(41.1=20.4),PF0009420=VWD=PU(50.3=72.6)
A:
NA
C2:
PF0009420=VWD=PD(48.5=40.3),PF087426=C8=WD(100=38.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGTCTGTACGGCAGCACC
R:
AGATCCAGGGACGTCCACTTT
Band lengths:
351-2031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]