GgaINT0138319 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3538674-3539670:-
Coord C1 exon
chr24:3539362-3539670
Coord A exon
chr24:3539236-3539361
Coord C2 exon
chr24:3538674-3539235
Length
126 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCTCATTTCCTTCCCCGCAGATC
3' ss Score
13.87
Exon sequences
Seq C1 exon
TACTGCCTAGAAGAGAACGGCCTCTACTACTGCCACGTCCGCACTGATGCCTCCTGCATCGTCTCTGGCTACGGGCACTACCTGACATTCGATGGCTTCTCATTCGACTTCCAGAGCAGCTGTGCCCTGGTGCTGTGCACCACCATCTCACGGCCGCGTGCGGAGCGGTCAGACACCTTCCCCACGTTCACTGTCACGGCCAAGAACGAGGATCGTGACACCTCCCTGGCCCTGTGGGTGAAGCAAGTGGAAGTGGAGGTCTTCAACTACAACATTGTTATCCATCGCGCCTACAAATACACTGTGATG
Seq A exon
GTGAGTGGGGCTGCGAGGGTCAGGCGGCGGTGAGGGGTGATCCCTTCCCACCCCAGCTGTGGCTCCTGAAGCTCCAGGTTGTTTCCCAAGGCACAAAGTCTTGCTATCTCATTTCCTTCCCCGCAG
Seq C2 exon
ATCAACAACGAACGGCTCTACCTACCCCTGAAGTTGGGCCAGGGCAAGGTGAACATCTTCGCCTTCGGTTTCCACATCGTGGTGGAGACCGACTTTGGGCTGAAGGTGGTGTACGACTGGAAGACCTTCCTGTCCGTCACCATCCCACGCAGCTTCCAGAACCTGACCTACGGCCTCTGCGGCCGCTACAACGGCAACCCCGACGATGACCTGGTGGCCGCGGGTGGCATGCCGGCCTTTGGCGTCACCGACTTCGTGCAGAGCTGGGCCAAGCGGGACACCTTCTGTCGGGTGGGCTGCGGCGACCGCTGCCCAGCCTGCGGCAAAGTGGAAGGCTTCTGGAAACCCCAGCAGCTCTGCAGCCTCATTCCCAGCCAAAGCGGTGTCTTCGCCAAGTGCCACAGCAAGATCAACCCCAGCTATTTCTACAAGAACTGCCTCTTTGACACGTGCGTTGACGGGGGAGCCATGCAGACGGCCTGCGGCTGGCTGCAGAACTATGCCAGCACATGCCAGACGCAGGGCATCGCCATCATCGGCTGGAGGAACTTCACCTCGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(51.9=81.6)
A:
NA
C2:
PF0009420=VWD=PD(46.9=40.4),PF087426=C8=PU(77.3=39.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTGTCACGGCCAAGAAC
R:
CAGTCGTACACCACCTTCAGC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]