BtaINT0146746 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32298683-32309082:+
Coord C1 exon
chr15:32298683-32299284
Coord A exon
chr15:32299285-32308520
Coord C2 exon
chr15:32308521-32309082
Length
9236 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAACCTGCTTCCTCTTGCAGGTC
3' ss Score
12.49
Exon sequences
Seq C1 exon
CTCTGGAGTGCCCGGAGAACAGCCATTTCGAGGAGTGCATGACGTGTACGGAGACCTGTGAGACCCTGGCCCTGGGCCCCATCTGTGTGGACACCTGCTCCGAGGGGTGTCAGTGTGACGAGGGCTATGCCCTGCAAGGCAGCCAGTGCGTCACCCGGAGCGAGTGTGGCTGCAACTTCGAAGGGCACCAGCTTGCCACCAATGAGACCTTCTGGGTGGACCTGGACTGCCAGATCTTCTGCTACTGCAATGGCACGGACAACAGCGTCCACTGTGAGACCATCCCCTGCAAGGACGACGAGTACTGCATGGAGGAAGGCGGCCTCTACTACTGCCAGGCCCGCACTGACGCCTCCTGCGTCGTCTCGGGCTACGGCCACTACCTGACCTTTGACGGCTACCCCTTTGACTTCCAAACCAGCTGCCCGCTCATCCTGTGCACCACAGGAAGCAGGCCGAACTCAGACACGTTCCCCAAGTTCGTCGTCACAGCCAAGAACGAGGATCGAGATCCGTCGCTGGCGCTGTGGGTCAAGCAGGTGGAGGTGACCGTGTGGGGCTACAGCATCGTGATTCACAGGGCCTACAAGCACACGGTGCTG
Seq A exon
GTGAGTGGGTGCAGGGCCCCAGCAGGGGAGCCGTGGGGATGTGAGGACAGGGCTCCCGGGCCAGCAAGCCAGGCTGCAGCTGAACCAGGCAGGCCCAGGATCTAAGGAAGAGCAGAGGATGTCAGGGCAGAGAAGGGCCCTGCAGATTTCCTGTCACTTTATCTTACAGATAAGGAATGGAGCCCTCAGACAGGAAAATACCCAGGTCCCCAGAACCAAATTAGGGACAGAGCCAGCTCTAGGAACTCAGCCTTTCATGTCACAGGAGAGCGTGCTGGGGACGGCACAGACCTAGATGGAGTCCTGGTCGACCACTGTCATATGGCCTCAGGCAGTGGCTGTCTATGTAGGAGAAGGCACGCCTAGTACAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATGGACTGCAGCCCACCAGGCTCCTCTGCCCATGGGATTCTCCAGGCAAGAGCACTGGAGTGGGGTGCCATTGCCTTCTCCGTAGTACAGGCTAGGCATCTGCAAGTGTACTGTTGTTTAATCTATCTCTTTGCCTTGTATTTTATTTGTTTTTGGCTGCACTGGGTCTTCATTGCTGTGCGCAGGCTTTCTCTAGTTGTGGCAAGTGGGGGCTACTCCCCAGTTGCGTTGCACAGCTTGCTCATTGCGCTGGCTTCTCTTCTTCCGGAGCACCCTAGGGTGCTAGGGTGCACGGGCTCAGTACTTGTGGTTCACGAGCTTAGTTGCCCCACAGCAGGTGGTATCTTTCCAGACCAGGGATCAAACCAGTGTTTCCTGCATTGACAGGTGAATTCATAACCACTGGACCATCAGAGAAGCCCCTCCTTCTCTTCTTTGAGATAAAAACATTTGCCTGCTTGGGCCTCCTTCTGCCTCTTCCAGTCTCCCTTTGGTTCCCGGGGAACCCGGGGGTTCAAGAGTCTTGCCCACATTTGGAGCACTTAGGGGCTCCCTTATAATCTTACTTTTCCCCACATTTTCTGTCCATTGAAGACAGGAGCAGGTAGGGGTTGAGGAGGTTTGTGCATTCCAAAGTCCAGCCTGTGGACATCGGCCCCAGCAAGAGCCCGGCCACCCCTTCTTCAAGGGCCCACCCTAAGTAGAACTTGAGACACTAACAAGCCATTACATTAGCATTTTGGAGGGGCTGACTTAGGATGTCAGCCTTCTAACACTATCTTCCCAGGTCTGTGGTGTAATATATCTCTAAGGAGATGCTTCTTCCTCTTGTATATGTTCTCTTTCAAATCCTGACTTAAAGAGTTCCTTGGGCAGCTCTGCTGATATCTTTCTTTTCTTAGTATTTCCTTTAACCCTCTTCTCTGACAAACAGAGATTTATGAGCTTTTTTTTTATTGCCATAAAAGTCACATAACGTAAAACATACTATTCTAAGCATACTTAACTGTACAATTTGAGACTTCCCTGTAGTTCATACGGTAAAGAATCTGCCTGCAATGGAGGAGACTCAGGTTCGATCGCTGGGTCGGGAAGATCCTCTGGAGTAGGAAATGGGAACCTACTCCAAGATTCTTGCCGGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGTGAAGGATCAGACACACCTGGGTGACTAACGATACAAACTGTACAGTTCAGTGGCACCAAGCGCATTCATGTTGTTGAGCAACTCTCATCACTTTCCACTCCCAAATTTTTCACCTTCCTAAACCAAAACTCTGCCCCTTGAAACACTAACTCGCCATCTCCCCTCCCCACCCCAGCCTCTGGCATCTACTAGTGTGCTTTCTGACTCTATGAATTTCACTGTTCTAGGTTCCTCGTGTAAGTGGAATCAAGTACTATTTGTCTTTGCGCTTAGCCGCTCAGTCGTGTCTGACTCTTTGCGATCCCATGGACTGTTGCTTGCCAGGCTCCTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGAATGGGTCGCCATTTCTGCCTCCAGGGGATCTTCCTGACCCAGGGATTGAACCTGTGTCTCCTGCAGCTCCTGAACTGTAGGTGGATTCTTTACCACTGAGCCACCTAGGAAGCTCAAAATACTGGAGAGGGTTGCCATTCTCTTCTCCAGGGGATTTTCCCAACCCAGGGATCAAACTCAAGTCTTCTGCATTGGCAGACAGATTCTTTAGCACTGAGCCACCAGGGAAGCACATATTTGTCTGTACCCTCTGTATATTGGAATGCATTCTTAAGGTTAACTTAATATATGTCCTAAAAACAGATTGTACCTTTTTTTTTTCCCCTGTGCTTTACAATAGGCTCTCACCAGCCATCTGCTCCTTAAACTGTCTTCTCTTTCACGTTTACTGGAAAATGTGCCTTTTTAGCACCTAAGATGAAAGTCTCACTATGGACATTCCTCTTCTCTTTCTCGGATATTTTACCCAAACCCCCTACTGTTTCCCTATGTGTTTCCTTCTAACAGTTGGTCCCTCAGTCATTGAAGGCATTAATCATAGTGCATTTTTCCATGATGTTTGTATCTGGCTCACTCAATACTCATTGTGGGCCTCTTGAGGGTGAGAACCACACCTAATCCATCTTTATGTTAAATGAATATACTGCATGCCATGACACTCAAAACGTTTGTCAAATAAAGGAAACAGATGACATAATAAGCCCTTTCTTCCAAGGTTCCTACGACTTTCATTTTGCCGCTGGTCACTTCTTCAGCAATTGGGAAGATTGAATTGCCACCCGGACAAGTTAGGAATATATCAGGTGCCTTGCTTTTCGCCACATAAGTTTTCCAACAGATGTCCGGATAGTCAAAGTCACTCATTAAAATAACTTCTCTCCTTCACTTCCATCAATTGTGTTAAAACAAAGACATCAATCATTTTGTCCATGTGGCTGCCTCCTATTTGTACTTTGCTCCTCCTCTGATATTTTTCTACCCTTAGATTTATAAATTTTGATGTCATTCCTTCTCCCTGTGACATTTAATGCTCTCCCACCTTTCTACTTTTCAGGTTGTTCTCTTCTTTTAAAATGCAATCTGCTCGTAAGCCCTGTCTCATCCAGTGTACTATGAAATTGTATTTTCTGCCTTGCATTACACACTCTCAAGGTTTAGTTAAGTAGACATCTGAGGTTACCTGTGTTTTCTGACCCAGTTACCTTCACATATGTACACCAGATCCTCATGGACACTTGTTTTTTTTTCTGCTCTCCCTTCTCTCCTCCCGAGTCTGATTCCCCGCTCTCACTGGGTGTTTCCCTCTCTTTGGGTCAGCTCACCTTCCAGGCACATGTCTCTTGAGATGCACTCATGGCTAAAAAGTCAAGAGCCTTGAGAACCACACTGCTGGTCTCTTCTTCTCAGAAAGAGATGGAGAGGGGAGAGTATGTTAGTTCTTAGGGCTCCCATCACAAAGCATCATAGACCAGGTGGCCTAAAACAGCGGAAACTTTCTTACAGCTCTGGAGGCCAGGAGTCTGAAATCAAGGTGTTGGTAGGGCCATGGTCCCTCTGGGGTCCTAGGAAAGCATCTATTCCAGGCTTTCTCCCAGCTTCTGGTGGTTGTAGGTGACCTTTGCCTTGGGGCCTCATACCTCCAGTCTCTGCCTCCATCTTTTCATGACCTTCTTCCCCCTGCGCCAAATCTCTCTCCTTTTAAGACCACTCGTCGTTGGAGTTAGGGTCCACCCTTTCACAGCGTGATCTGATCTTAACTTAATTAAGATCTGCAAAGACCCTATTTCCGAGCAAGACCACATTCACACATCCTGGGGGTTAAGACTTCAGTGTATCTTTTGGGGGGACACAACTCAGTCTACAACAGGGACTAATTAGAAAGTCATGGGCAGCAAGGAGGAATTGATTAACGGGGTGAGGGGACACTTTCCACGGCCTGCCTTTCTATGTCCCTGGATGTCCTAAGATGCCCAAGCTGGGAACAGAGTATATAGCTTTCCAATCTCTGACAGGAAGACCAAGTTCAGGATGCTTGAAGGTTCTTTCCTTTGGGGGCCTGGGGGATTTAGCATTTACTTTGAATTATTAACATGCACTACAGGATCTGCTTGTTCAATGATTTGCATTTGTTTTTCCCATGATGTTATTATTAGTCACCATCTCTCCCTGAGAAGAATAACGGCCATCATAATGACAGCGCACAGTCAAGCGCCGGGCAAAACACAGCAACAGAGCCGGGTCACTGCGGGTGCACACAAAACCAGAGGGGACCTGGAGGGGACTCCTTGGGACGCCAGGTCCCTCTTCGACTCTCCTTCCCTGCAGTACTGAGGATATGGGGAAATCCACTAAGCCGAGGAAAACTAGAAATAAACATGCTGTGTGTGTACCAGGCAGGGTGTGGGGTGAGCAGGAGAGGGGAGCCTCTCCCAGGCATTGCACAGCCCAAGCATCAGCCATCCACAGCCTGAGCTCCACAGAGATGGCCCCTGTCCTCCGTCTCCCCTAGGCTCAACACAGCCAGGTCCTGAGTGGTCCAGGCTAAGGGGAAGGCTTTTAGGAGCCTCACAGCCAGTGTCTTTATCACTGACTGCTCATCCTTTGGGCAGCAGAGAAGAGAGGACCTTTGAACATCACTGTGGCTCAGTTGTGTTTGACAGGCTTGTATTGATGTCTGTCCTGTGCCAAACCCTGAGGGTAGAAACACGAGTCAAACAGGGCTCCTGTGCTAAGGGAACTCAGGGTCTGGTAGGTGAGACAGATGTGTTCACAGGTAACTTTAACATGATGTGAAATCCCAGAAAAATGTGATGTGTGGGTGGAAGGTGGGTGTCATGAGAGAACAGGTTTCCTGAGCTACCTGGGGGTGGAGAAGGAAGGCTTTCTGGAAGAGATGACCCGGAGCTGAGCCCTGAAGGTGTCCATTGGCCAGGCCCAGAAGGAGGACCAGGAATCGTCCATGGAGACCCAGAGGGGCAGCAAGGTAGGGGGCTGTGAGGGGACCTCAGAACAGCTGAAGAGGCAGCAGCAGGTCTGGGCCAGCTATTTAAAGGAAAGCTCTCCACTGAAAAGCAAGTTTGTGGCCTTATTTCCGATACTCAGATTAGAAACAAATAGCCCCACACTGATCCCCTCATCCTCCTCTTCCTCCTCTGTGCCCGCGTCCTCCGTCCATCAGGCACCGCTTCCTTACTGACCCCTTCCTTCCTCGGCCTCCCACCTTCCCTCCATTCTCACTCGCAAGGGCAGACAGGGCAGGGATGTAGGGATGGAGGCGGGATTCCCGGGGCTTCAGAGATGGGAGAAGCCAAGCCGGCCTGTTTATGTTGAGACCTTGCTTTCCCAGGTTCTCGAAGCCTCTCAGTTGTAATCCAGGTACGAGACCTCCCCAAGGTGTCGCCTCCTGCTTGACATCCAGTAGCCAGGAGCAGAGAATGTGGAGAAACGCCAGCCGGCGCATGTGAGCCATTTGGTACACAGCCTTTCATTTATTCACGTGTGTTGTCAAGGCTGGTGGGAGGCCCTTCGGCCTCCGTGTCTCAGTGACCTTGAGCACCTGTATTATGGGTCTACATGGAACCTATGTCACTTGAGCTCTGGGCCTTCTTATTGAGAGAATTGTGCCTGCCAGATGTGATCTCCCTCCTCCACTTCCCTCCTCCACCCTGTCACCAAAATGACCCATCACCACGTCATCTTCACCTCCTCTCCTTGTTCCAGAGAATGAGGCATCTCTTCCCACTCCATGGCCACTACCCACCTGCACCATCTCTATCTTGCCTTCTCAGGCTCTTGCCCATTTGTCATCTCCTCCCTGTCCTGTGTCTTAGGTCCTTCTCTTCAACCCATAAACGTATTTATTCTAAGACAAACCTTGACCCCAGTTCAACCCAATCCCTCTTCTATCTAATCCCTCTGCTCCCTTTCCTTACCAAACTCCTGGAGTCATCTCTGCTTCCATATCCCCTGTCTGCTGTTTAACTTCTCCAGTCTAACCTCTGGTTTCATCATGCTACTGAAGTTCTTTTACTAAGATCACTGGTGACTTTTTTGCAAAATGAGTCCCTTTCAAGTTTGATCTCATGGGACATTACATACGTGGCCCCCCATGGTCCAGGAACCTCCCATCTCTCCATCTTCATCTCCCATCATTCCCAAGGTCACATTTTGTGCTCCAGCATCATTATTTTGCTGTAATTTCTCATATTTATGAGGTTGTTTCTCTCCTCTTGGCTTTGACGTGGGCTATGCTCTCTTCTTGGGATTCCCTTTTCTTCACTTTCATTCCTTCTTTTTTGTTGTTTTGTTCTGCTTTTAATTTTTATTGAAATGTAGTTGACTTATAATGTTGTGTTTCTGCTGCTAAGTCACTTCAGTCGTGTCTGACTCTGTGAGACCCCATAGACAGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACATTGGAGTGGGTTGCTATTTCCTTCTCCAATGCGTGAAAGTGAAAAGTGAACGTGAGGTTGCTCAGTCATATCCGACTCTTAGCAACTCCGTGGACGGCAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGATAGTTTTAGGTATATAGTGAAGTGATTCAGTTATACATACATGTGTATATAGAGATATACACACACATATATATTTCTTACATTCTCTTCCATTATAGAATATTGAGTATGGTTATTCTGTATATTATAGAATATTGAGTATAATTCTCTGTGATACAAGTAGATTCTTGTTGGTTAGCTATTTTATCTATAGCAGTATTTTTTAAAAATTTTTTTGGGGTATGGTTGATTTACAATGGTGTTAGCTTCAGGTGCACAGCAAAGTGGCTCAGTTATACATGTACATATATCCACTCTTTTGTAAATTCTTTTCCCATATAGGCCATTACAGAGTATTGAGTAGAGTTCCCTGTGCTAAACAGTAGATCCTAACTAGTTATCTAGTATGTGTATATTTTAATCCCAAACTCTTCACTTGTCTTGACTGGCCAGCACTACTCACCATTCAGAGCTGGGTGTGGGCACCATCTTCTGTAGGTATCCTTGATTCTGTTCCCAGGCTGAGTCTGGTTCCTGTGCATCTGTTTATCTCTACTGTTAACTTTTATCAGACAATCAGACCTGCTTATGTACTTGTCTTGACCACATGCCTGTGAGCTCCTAGGGAAAGAGCCTTGTGCTTTATCCTAGCATTTAGCACGGTGGCTGGTGCACAGTAGTGCCAGACTGATGCCTACTGGATGAGTGAGTGAGTCCTGCCTGGACAAATATTCACAGACAAGGAGATAGCTGAGTTGAAATTTGAAGGGTGAATATTGCCCCAGAAAATGGGGGATGGGCGAGGAGCATCAGTGCTGTCTCAGGTTTGATCGCCTAGAGGCAGAGTCTGAGAAAGTGGTGCCTGGAAATGCGGGAAACACCAGGAGCAGGGAGCTCAGAGAGGATGTGGTCTAAGCTGGACACTAGTTACAGTCACCGGAAACTCTGGTGCGTGACCCACACACAGAATCGGTCCCCTGTGTTGGTCAGTCATTGACCAATGGCTGCCCTTAGGGTGAGGTCAGGGCTGGAATAGGAGGTCATAACCTCCTGGGCCAGCTGGCTTCCCTGTGGCCAAGACCAACTGTGAGTTATCACTAGCCCACATTCACAACTGCTGAGGATGGGTCCCCTGGAGGGACCCAGAAAGCACCACCACACTCACAGCAAAGGGAGTAGCATGTGGAGTGGTGCAACTCAGTCCGTTTGGGGAGCAGTGAAGTGCTGGGTGTGGCTGGGGTGCAGGAAATGAGTGGGTTGGGCCTGAGAGGCAGGGCCAGCTCCTGGAGAGCCCTGTCGGATGTGCTAAGCGTATCCCCCATTTCATTCACACTGCAGAGAGGGTTTTAAGTATTAATTGCATTAAAAAATATTGGAGAGGCAGTGAAGAGTGAATGAAGGAGAGGGGAGGACCAGGGCAGGGAGAGGAGTAGCGGGTGTGTTTAAGAGTCGAGGTGGAAGGTTGGAAGGTGATGAGAGTCTGAATTAAGGTGGTTGGGCTGGGGGTGGGAGTGTCAGATGAGAAAGAGATTAAGGAGGTCAGAAGGGGAGGTATTTCCGGTCAGAGAGCAACCTCAGACCACCCCAAAGGGCAGCCACCTTCCTCTCCACCAGGAAGATCAGCTGTCTCTTAGCCCTCACAACAGTCTTTGTTTTCCAGCATGCACTCACCCAGCCACAAGCTGCAGGATTTGACTGATCTGAATCAAAGCGGTGCAAGGGCCATACCGTTCTGGAGTTTGAAGCTCAGAGATTTCCTTGTTTTCTCAACTTAAAATATACAGGAGGAAACATGTGTCAAGTACCCTCTCCACGTGAGGCATTGTGGTGGGCGCCCAGCGGGGAATGAGGCGGGAGGTGGATGCATAGATCAATAAAGTGTGGTCCCTCCTCTCAAGTCGCTCCTAATCCTGTAGATGAGACAGAGGTGTAGACAGCCAGCTGTAATATGAAGCTGATGTCATATGCGCTTCAGTAACAGGTACGCGTGCCTGATCTTGGCCAAAGGTGCAGAAGAACAGGAGAGAAGTATAAATAACTTGTTCTGGTTGCCCAGACGAGGGAGTGATTCATTCTGACCACAGGCTCCAAAAATCTTGCCTTATAGAAGAGCTGGCATTTGAGCAGGGTCTGGGGGATGAGAAGGATGTTGATGGGTAAAGAATAGCATCCTTGGCAGAGGGACCAGCGAAGTCAAGTCATTCTTCAGGAAAAAGAAGATCCTGAAGGATTTAATAAATTGAGGCTTGTCTAAGATAAATCCATGGAAGAGCTGGAAATAGCAACATAAGAGTTCTAGGTTTGGATATTTTAGTCTAAACTTTAATTGAATTCTTATTACCCTCTCATTACCTTGGAGAAAACAATTTGAACTCCTGGGGGAAATAACGCTATAAACAGAAGGCACTGAAATAAATAGGTGTATTAATGTACAAAGGATAGTCATTTAAGTCTGTTCAAATCCTAATAATAGTTGAGTGACAGAAACGACACTAAATACAAAGATTGGATTCAACCTGCTTCCACCCCCCTCTGGGGCTGCCTCTCAGAGACTAATCATTAAAAGAGTGGTGGCGGGCGGGGTAGGGGAATGTCTGGGTCACCTGGATTTGTCTATGTCAACCTGCTTCCTCTTGCAG
Seq C2 exon
GTCAACAATGAACGGCTCTATCTGCCCCTGAAGTTGGGACAAGGGAAGATAAACATCTTTTCTTTTGGTTTCCACGTGGTGGTGGAAACTGACTTTGGGCTAAAGGTGGTCTACGACTGGAAGACCTTCCTGTCCGTCACGGTCCCTCGGAGCATGCAGAACAGCACCTACGGCCTGTGTGGCCGCTACAACGGCAACCCCGACGACGACCTGGAGATGCCCATAGGTCTGCTGGCCTCCAGCGTCAATGAGTTTGGACAGAGCTGGGTGAAGAGGGACACCTTCTGCCAGATTGGCTGTGGTGACCGCTGCCCATCCTGTGCCAAGGTGGAAGGTTTCTCCAAAGTGCAGCAGCTCTGCAGCCTCATCCCCAACCAGAATGCGGGCTTCACCAAGTGCCACAGCAAGGTCAACCCCACTTTCTTCTATAAGAACTGCCTCTTCGACTCTTGCATCGATGGGGGCGCTGTGCAGACCGCCTGCAGCTGGCTGCAGAACTATGCCAGCACCTGCCAGACCCAGGGGATCGCGGTGACTGGCTGGAGGAACTACACGTCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.4),PF127142=TILa=WD(100=28.4),PF0009420=VWD=PU(50.9=40.3)
A:
NA
C2:
PF0009420=VWD=PD(47.8=40.4),PF087426=C8=WD(100=40.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development