BtaINT0061729 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49739008-49740771:-
Coord C1 exon
chr18:49740155-49740771
Coord A exon
chr18:49739552-49740154
Coord C2 exon
chr18:49739008-49739551
Length
603 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCCACCCCGCCCCTTCAGGTG
3' ss Score
10.82
Exon sequences
Seq C1 exon
AGCTCCCCTGCCCGGAGAACAGCCACTACGAGCTCTGTGGCCCACCCTGCCCAGCCAGCTGCCCATCTCCCACGCCCCCCACCAGCCCTGCCGTATGTGAGGGCCCCTGCGTGGAGGGCTGCCAGTGCAACTCAGGCTTCGTGTTGAGTGCTGACCGCTGCGTCCCCCTGGAAGGCGGCTGCGGCTGCTGGGCCAATGGCATCTACCACGAGGCCGGCAGTGAGTTCTGGGCTGATGCCACCTGCTCCCAGAGGTGCCAATGTGGGCCCAGAGGTGGCTCGCTGGTCTGCAAGCCTGCCAGCTGCAGGCTAGGTGAAGAGTGTGCCCTGCTGCCCTCAGGCCAGCATGGCTGCCAACCTGTCAGTACAGCTGAGTGTCAGGCCTGGGGTGACCCCCATTACATCACCCTGGATGGGCACCGATTTGACTTCCAAGGCGCTTGCGAGTACCTGCTGAGTGCGCCCTGCCATGACCTACCTGAGGGGGCTCTGAACTTCACCGTCACGGTAGCCAATGAGCACCGGGGCAGCCAGGCCGTCAGTTACACCCGCACTGTGACCCTGCACATCTACGGCCACAGCTTCACCCTCAGTGCCGGCTGGCCCCGGCAGCTGCAG
Seq A exon
GTGAGCAGTCTGTGGACCAGCACGTGCCAGCCCTGGGGTTGCCTGGGATAATTAGGGGTCTGCCAATTCCCTGACTGCCTTTCACAGGCTAAGGGGGCAGATGGAGGGGTTCACAGTAGGGGGTTTGGAACAGCGGCTTCCCCATGTCTAAGCCTTAGTTTACTCCTCTGTGAAATGGGTCTAAGAAAAGTATCTGCCTTAGAGGGTAGTGTGAGGAGCCAATGATATCCTGTCAATAATACAAAAAAAAAAAATTAGTTCAGTCATGTCCATCTCTTTGCGACTCCATGGACGGTAGCTCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTTTAGGGTATCTTCCCCACTCAGGAATCGAACCCGGTTCTCCTGCATGCAGGTGGATTCTTTACCACTGAGCCACCGGGGAAGCCCTCGTTATTACTGCTACAACTATTAACTATTACAAGGAGGGGAAGGTGACGCGCACAAGGTGTCTCCGTCCCAGCCCCCAGTAGATAGTGAAGTCAAGATTCTAACCTGTGCCTCCGACGTTCAGTAACCCCACCCCCACCCCGCCCCTTCAG
Seq C2 exon
GTGGACGGCAAGCTGGTCGCCCTGCCCTTCCAGCTGGACTCCCGTGTGCACGCCTACTTGAGCGGTGCCGACGTGGTGGTGACCACCGCCTCCGGGATCTCGCTTGCTTTCGACGGAAACAGCAACGTGCGCCTGCGCGTGCCGGCGGCGTACGCGGGCGCCCTCTGTGGCCTGTGCGGGAACTACAACAAGAACCCCAACGACGACCTGAACGCGGTGGAAGGGAACCCCGACCGCTGGCAAGTGGGCGGCGCCGCGGGCTGCGGAGAGTGCGTGCCCGGGCCGTGCCCCAAACCCTGCACGCCCGAGCAACAGGAGCCCTTCGGCGGCCCCGACGCCTGCGGCGTGATCTCGTCCCTCGAAGGCCCGCTGGCTCCCTGCCACAGCCTCATTCCGCCCGAGCAGTACTTCCAGGCCTGCTTGCTGGACGCCTGCCAGGCTCAGGGCCATCCAGGAGGCCTCTGCCCGGCCGTGGCCGCCTATGTGGCAGCCTGCCAGGCCGCTGGGGCCCAGCTCGGCGAGTGGAGGCGGCCGGACTTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261:ENSBTAT00000006924:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=28.2),PF127142=TILa=WD(100=28.2),PF0009420=VWD=PU(51.0=38.8)
A:
NA
C2:
PF0009420=VWD=PD(47.8=41.2),PF087426=C8=WD(100=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCATTACATCACCCTGGA
R:
GTTGCTGTTTCCGTCGAAAGC
Band lengths:
352-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development