DreINT0010749 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36525899-36528519:-
Coord C1 exon
chr15:36527921-36528519
Coord A exon
chr15:36526464-36527920
Coord C2 exon
chr15:36525899-36526463
Length
1457 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGTTTTATTCTCTCTTTAGGTG
3' ss Score
12.22
Exon sequences
Seq C1 exon
CGATGACCTGCCCGCCGAACAGTCATTATGAGGCCCGTACATCTCCCTATGCAGTAACCTGTTCACATCCAGACCAGCCGCAGAATTGTACTGATACCTGTGTGGAAGCATGTGTCTGTGACAGCGGGTTTGTCCTCAGTGCTGACACTTGTGTGCCCACCAATCAGTGTGGCTGTTCTTTTGAAGGTGTCTACTACCAACCAGGCCAAACATTCTGGGCCGACAATCAATGTCTTCGGCTGTGTGAGTGCGATCGTAACCTGAGTGTCGTGGTGTGTCGTGAATCCTCCTGTCCTGCTGGTGAGAGATGCTCAGTTGTTGACGGAAAACGCAGATGTCAACCAATGAGCACCGGCGAGTGTGTCGCATCTGGAGACCCACATTATCGCACATTTGATGGACTCCGTTTTGACTTCCAGGGTACGTGTGTGTATCAGTTGGCAGCCCTGTGTGTTTATAAAGAGGGTCTTGTGCCTTTCAATGTGACTGTTCAGAATGATCATCTCTGGGGCAATGCAGTGAGCTTTACTAAGACTGTCAATGTGTCTGTCAATGGATTCTCCATCACAATGACTAGAGAACATCCCAATCAGATACTG
Seq A exon
GTGAGTACCATCACGAAATTTACACTTATGCACATTAAAAACTTTAAGAACGCTCTTGTGTTTAGAGTTTTGTAGCACAATATTCCTTATTTCTGTCTTTTTTATCTGTTACAAAATAGGCTAGCATGAATCCCAAAGAGACTCTGATTTAGATCTAATAGTAAATTAGATTTGATTCCCAAGTGTAATTAGATTCCAAAAACATATGACTCTAAATAAGTCTTTTTAGTGAATCTGATTCCTAAACAAATGATGGATACTTTTATCCAAAATGACATAGTTGATAATTATCTTTTTTTGTGAATCTGAGTTGTTTAGTGAATCCAATTCTTACAGAACAATATATACTGATTTAGACAAGTCTATACCATGACTGAATGCATTCAGAATGACCAACGTTTGATGTTTGACCAATGTTGAGTTTGTTCTTTGTTTTGTAAATCAAATCAATACACAATGTCTTACCTGATTCCAAAAAAATGACTCTGAGTTGATTCTTTTTCAATGAATCAAATTCATACTGAGCGACCAAAGTTGTCTGATTCCAGAACAAGTGACTCAGAGTTGATTCTTTTCAATGAATCAAACTTATACTGAGCCATCAGTTATGTCTGTTTCAAAACCAATGACTCAGAGCTTGTTTTTTTTAATGAATCAAATTCATACGGATTCACCAGTGTTGCGTGATTCCCGAACAAATGACTCTGAGCAGACTCTTTTCAATGAACCAAATTTATACTAAGCAACCAGGGTTGTCTGATTCCCCAACAAATAACTCTGAGCTGATTCTTTTCAATGAATCAAATTCGTACTGAGCAACCAGAGTTGTCTGATTCCTGAACAAATGACTCTGAGCTGATTCTTTTCAATGACTCAAATTCATATTAAGCAACCAGTTTTGTCTGATTCTCCATCAAATAACTCTGAGCTGATTCTTTTCATTAAATCAAATTCATACTGAGCAACCAGAGTTGTCTGATTTCTGAACAAATGACTCTGAGCTGATATTTTCAATGAATCAAATTCACACTAGGCAACCAGTTTTGTCTCATTCTCCATCAAATAACTCTGAGCTGATTCTTTTCAATAAATCAAATTCATACTGAGCAACCAGAGTTGTCTAATTTCCAAACAAAAGACTTTGAGTTAAGTATTTTCAATGAATCAATTCATACTAAGCCACCAGTGTTGTCTGATTCCCAACAAATGACTCTGAGTTGAATCTTTTTATTGATTGTCTGATTAAAACAGAACAACTATTGTAATTAAATACATGTAATTGTTGTTGTTTAAACCCATATTGCAATAAAATAAAAGTTTTCAAATTATTTTTTCTTTGAGCGATACTAAAAGAGTAATCAGTAATCTTAATTTAAGAAGAACTGCATTTCAAATCATTTTAACACAAATAAGCAATGTTGTGACTGTTAAACCTATTTGTTTTATTCTCTCTTTAG
Seq C2 exon
GTGGATGGCCAATTAGCAGATCTTCCGTTTTTGCTGAAAGGCATGTTAATAGTTTTCCGTAGCGGTAACACTGCTGTGTTGAAGACAAACTTTGGTCTCCAGGTGACCTTTGACTGGTTCAGTATGGCGAGGGTCAGTTTGCCAAGCAATTACAGCGGTGCAGTGTGTGGACTTTGTGGAAACTTCAACGGTGATGTTCAAGATGACTTTGTGATGCGCAATGGTACGAGCGCACCCGACAGTGGTAGTCTGGGACAAAGCTGGCAGGTTTCCGCTATCCCAGATTGTACCTCAGCTGGTTGCCTTGGCATTGGTTGCTCAACTTGCCCTTCGACCCAGAGGGAAAATGCAGAGTGCTATTGTGAGATCATTGCAAATCGGACAGGGCCTTTCAGAGAATGTCACACCTATATTGATCCTGGGCCTTATGTAGAGGACTGCATATTGGACACCTGCCAGATTCAGGGATATCAGGGTGTGTTGTGTGGTGCGGTGGCAGCCTATGCATCCGCATGTCAGAGTCAAAGCATTACGGTCTACCCGTGGAGAAACGCCACTTTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.0),PF127142=TILa=WD(100=28.5),PF0009420=VWD=PU(50.6=39.5)
A:
NA
C2:
PF0009420=VWD=PD(48.1=39.7),PF087426=C8=WD(100=40.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCACATTTGATGGACTCCG
R:
ACTGACCCTCGCCATACTGAA
Band lengths:
352-1809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]